View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18377_high_9 (Length: 239)
Name: NF18377_high_9
Description: NF18377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18377_high_9 |
 | |
|
| [»] chr1 (11 HSPs) |
| |
|
| [»] scaffold0400 (2 HSPs) |
| |
|
| [»] scaffold0365 (2 HSPs) |
| |
|
| [»] scaffold0289 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 14522192 - 14521968
Alignment:
| Q |
15 |
tcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgctttgacagaaatccga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14522192 |
tcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgctttgacagaaatccga |
14522093 |
T |
|
| Q |
115 |
catcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggtagcttggacaacattttga |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14522092 |
catcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcttggagaagggtagcttggacaacattttga |
14521993 |
T |
|
| Q |
215 |
aggacaatgaacaagctggtgaatt |
239 |
Q |
| |
|
||||||||||||||||| ||||||| |
|
|
| T |
14521992 |
aggacaatgaacaagctagtgaatt |
14521968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 15041131 - 15041355
Alignment:
| Q |
15 |
tcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgctttgacagaaatccga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||| |
|
|
| T |
15041131 |
tcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaagttagattagtgcttagacagaaatccga |
15041230 |
T |
|
| Q |
115 |
catcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggtagcttggacaacattttga |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
15041231 |
catcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcttggagaagggtagcatggacaacattttga |
15041330 |
T |
|
| Q |
215 |
aggacaatgaacaagctggtgaatt |
239 |
Q |
| |
|
||||||||||||||||| ||||||| |
|
|
| T |
15041331 |
aggacaatgaacaagctagtgaatt |
15041355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 15037563 - 15037787
Alignment:
| Q |
15 |
tcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgctttgacagaaatccga |
114 |
Q |
| |
|
|||||| ||||||||||||||||| |||||| ||| ||||| || | |||||||| ||| |||| || |||||| ||||||||||||||| ||| |
|
|
| T |
15037563 |
tcaagttgtagctgtgaagaaacttcattcattacaaaatgaggaaatgtctaatctgaaatctttcacaaatgagatccatgctttgacagaaattcga |
15037662 |
T |
|
| Q |
115 |
catcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggtagcttggacaacattttga |
214 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||| ||||||||||||||| |
|
|
| T |
15037663 |
catcgcaacattgttaagttatatgggttttgttcacatcgactacactcgtttttggtttatgaattcttggcgaagggtagcatggacaacattttga |
15037762 |
T |
|
| Q |
215 |
aggacaatgaacaagctggtgaatt |
239 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
15037763 |
aggacaatgaacaagctggtgaatt |
15037787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 15011544 - 15011768
Alignment:
| Q |
15 |
tcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgctttgacagaaatccga |
114 |
Q |
| |
|
|||||| ||||||||||||||||| || ||| ||| ||||| ||| | | |||| |||||||| || |||||| ||||||||||||||| ||| |
|
|
| T |
15011544 |
tcaagttgtagctgtgaagaaacttcactcattacaaaatgaagaaatgccaaatcggaaagctttcacaaatgagatccatgctttgacagaaattcga |
15011643 |
T |
|
| Q |
115 |
catcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggtagcttggacaacattttga |
214 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15011644 |
catcgcaacattgtgaagttatacggcttttgttcacatcgactacactcatttttggtttatgaattcttggagaagggtagcttggacaacattttga |
15011743 |
T |
|
| Q |
215 |
aggacaatgaacaagctggtgaatt |
239 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
15011744 |
aggacaatgaacaagctggtgaatt |
15011768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 15032996 - 15033212
Alignment:
| Q |
15 |
tcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgctttgacagaaatccga |
114 |
Q |
| |
|
|||||| ||||||||||||||||| |||||| ||| ||||| ||| | ||||||| |||||||| || |||||| ||||||||||||||| ||| |
|
|
| T |
15032996 |
tcaagttgtagctgtgaagaaacttcattcattacaaaatgaagaaatgcctaatctgaaagctttcacaaatgagatccatgctttgacagaaattcga |
15033095 |
T |
|
| Q |
115 |
catcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggtagcttggacaacattttga |
214 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||| |
|
|
| T |
15033096 |
catcgcaacattgtgaagttatacgggttttgttcacatcgactacactcatttttggtttatgaattcttggagaagggtagcatggacatcattttga |
15033195 |
T |
|
| Q |
215 |
aggacaatgaacaagct |
231 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
15033196 |
aggacaatgaacaagct |
15033212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 15017659 - 15017883
Alignment:
| Q |
15 |
tcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgctttgacagaaatccga |
114 |
Q |
| |
|
|||||| ||||||||||||||||| |||| | ||| ||||| ||| | |||||| | |||||||| || ||||||| ||||||||||||||| ||| |
|
|
| T |
15017659 |
tcaagttgtagctgtgaagaaacttcatttattacaaaatgaagaaatgtctaatatgaaagctttcacaaatgagattcatgctttgacagaaattcga |
15017758 |
T |
|
| Q |
115 |
catcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggtagcttggacaacattttga |
214 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||| |
|
|
| T |
15017759 |
catcgcaacattgtgaagttatacgggttttgtttacatcgactacactcatttttggtttatgaattcttggagaagggtagtgtggacatcattttga |
15017858 |
T |
|
| Q |
215 |
aggacaatgaacaagctggtgaatt |
239 |
Q |
| |
|
|||||||||||||||||| |||||| |
|
|
| T |
15017859 |
aggacaatgaacaagctgctgaatt |
15017883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 15002732 - 15002875
Alignment:
| Q |
96 |
tgctttgacagaaatccgacatcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggt |
195 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
15002732 |
tgctttgacagaaattcgacatcgcaacattgtgaagttatacggcttttgttcacatcgactacactcatttttggtttatgaattcttggcgaagggt |
15002831 |
T |
|
| Q |
196 |
agcttggacaacattttgaaggacaatgaacaagctggtgaatt |
239 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15002832 |
agcatggacaacattttgaaggacaatgaacaagctggcgaatt |
15002875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 14532313 - 14532089
Alignment:
| Q |
15 |
tcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgctttgacagaaatccga |
114 |
Q |
| |
|
|||||| || |||||||||||||| || ||| ||| ||||| ||| | |||||||| ||||| || || |||||| |||||||| |||||| ||| |
|
|
| T |
14532313 |
tcaagttgttgctgtgaagaaacttcactcattacaaaatgaagaaatgtctaatctgaaagcattcacaaatgagatccatgctttgaaagaaattcga |
14532214 |
T |
|
| Q |
115 |
catcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggtagcttggacaacattttga |
214 |
Q |
| |
|
|||||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| |
|
|
| T |
14532213 |
catcgcaatattgtgaagttatacggcttttgttcacatcgactacactcatttttggtttatgaattcttggaaaagggtagcatggacaacattttga |
14532114 |
T |
|
| Q |
215 |
aggacaatgaacaagctggtgaatt |
239 |
Q |
| |
|
|||||||||||||||||| |||||| |
|
|
| T |
14532113 |
aggacaatgaacaagctgctgaatt |
14532089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 22 - 231
Target Start/End: Original strand, 14483302 - 14483511
Alignment:
| Q |
22 |
gtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgctttgacagaaatccgacatcgca |
121 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||| | || ||||| |||||||||||| ||||||| |||| |||||||||||||||| | |
|
|
| T |
14483302 |
gtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatctgaaagcttttgcaagtgagatccaacctttagcagaaatccgacatcgaa |
14483401 |
T |
|
| Q |
122 |
acattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggtagcttggacaacattttgaaggacaa |
221 |
Q |
| |
|
||||||| |||||||| |||| ||||||||||| | | |||||||||||||||||||| ||| ||||||||||||| |||| || |||||||| ||| | |
|
|
| T |
14483402 |
acattgtgaagttatacgggtattgttcacatctattgcactcatttttggtttatgagttcttggagaagggtagtctggataagattttgaaagacga |
14483501 |
T |
|
| Q |
222 |
tgaacaagct |
231 |
Q |
| |
|
||| |||||| |
|
|
| T |
14483502 |
tgagcaagct |
14483511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 14468347 - 14468547
Alignment:
| Q |
15 |
tcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgctttgacagaaatccga |
114 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||| ||||||||| | || ||||| ||||| |||||| ||||||| ||||| |||||||||||| |
|
|
| T |
14468347 |
tcaagttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatctgaaagcatttgcaagtgagatccaagctttaacagaaatccga |
14468446 |
T |
|
| Q |
115 |
catcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggtagcttggacaacattttga |
214 |
Q |
| |
|
||||| |||||||| ||||||| || | ||||||||||| | | |||||||||||||||||||| ||| |||| ||||||||| ||||||| ||||||| |
|
|
| T |
14468447 |
catcgaaacattgtgaagttatgcggttattgttcacatccattgcactcatttttggtttatgagttcttggaaaagggtagcgtggacaagattttga |
14468546 |
T |
|
| Q |
215 |
a |
215 |
Q |
| |
|
| |
|
|
| T |
14468547 |
a |
14468547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 230
Target Start/End: Original strand, 14504533 - 14504741
Alignment:
| Q |
22 |
gtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgctttgacagaaatccgacatcgca |
121 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||| | || ||| | |||||||||||| ||||||| | ||||| ||||||| ||||||||| | |
|
|
| T |
14504533 |
gtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatttgaaagcttttgcaagtgagataaaagctttaacagaaagccgacatcgaa |
14504632 |
T |
|
| Q |
122 |
acattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggtagcttggacaacattttgaaggacaa |
221 |
Q |
| |
|
||||||| |||||||| |||| ||||||||||| | | |||||||||||||||||||| ||| |||||||||| || |||| || |||||||| ||| | |
|
|
| T |
14504633 |
acattgtgaagttatacgggtattgttcacatccattgcactcatttttggtttatgagttcttggagaagggcagtctggataagattttgaaagacga |
14504732 |
T |
|
| Q |
222 |
tgaacaagc |
230 |
Q |
| |
|
||| ||||| |
|
|
| T |
14504733 |
tgagcaagc |
14504741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 13413 - 13556
Alignment:
| Q |
96 |
tgctttgacagaaatccgacatcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggt |
195 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13413 |
tgctttgacagaaattcgacatcgcaacattgtgaagttatacggcttttgttcacatcgactacactcatttttggtttatgaatttttggagaagggt |
13512 |
T |
|
| Q |
196 |
agcttggacaacattttgaaggacaatgaacaagctggtgaatt |
239 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13513 |
agcatgtacaacattttgaaggacaatgaacaagctgctgaatt |
13556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 7033 - 7247
Alignment:
| Q |
16 |
caagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgctttgacagaaatccgac |
115 |
Q |
| |
|
||||| ||||| |||||||||||||||||| ||| ||||||||| || ||||| |||||||| ||| ||||||| ||||| || |||||||| | |
|
|
| T |
7033 |
caagttgtagcggtgaagaaactccattcattacaaaatggagagacgtccaatctgaaagctttcgcaagtgagatccaagctttaactgaaatccggc |
7132 |
T |
|
| Q |
116 |
atcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggtagcttggacaacattttgaa |
215 |
Q |
| |
|
|||| |||||||| |||||||| |||| ||||||||||| | | |||||||||||||||||||| ||| ||||||| || || ||||||| |||||||| |
|
|
| T |
7133 |
atcgaaacattgtgaagttatacgggtattgttcacatccattgcactcatttttggtttatgagttcttggagaaaggcagtgtggacaagattttgaa |
7232 |
T |
|
| Q |
216 |
ggacaatgaacaagc |
230 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
7233 |
agacaatgaccaagc |
7247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 14056 - 14199
Alignment:
| Q |
96 |
tgctttgacagaaatccgacatcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggt |
195 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14056 |
tgctttgacagaaattcgacatcgcaacattgtgaagttatacggcttttgttcacatcgactacactcatttttggtttatgaatttttggagaagggt |
14155 |
T |
|
| Q |
196 |
agcttggacaacattttgaaggacaatgaacaagctggtgaatt |
239 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14156 |
agcatgtacaacattttgaaggacaatgaacaagctgctgaatt |
14199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 7677 - 7891
Alignment:
| Q |
16 |
caagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgctttgacagaaatccgac |
115 |
Q |
| |
|
||||| ||||| |||||||||||||||||| ||| ||||||||| || ||||| |||||||| ||| ||||||| ||||| || |||||||| | |
|
|
| T |
7677 |
caagttgtagcggtgaagaaactccattcattacaaaatggagagacgtccaatctgaaagctttcgcaagtgagatccaagctttaactgaaatccggc |
7776 |
T |
|
| Q |
116 |
atcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggtagcttggacaacattttgaa |
215 |
Q |
| |
|
|||| |||||||| |||||||| |||| ||||||||||| | | |||||||||||||||||||| ||| ||||||| || || ||||||| |||||||| |
|
|
| T |
7777 |
atcgaaacattgtgaagttatacgggtattgttcacatccattgcactcatttttggtttatgagttcttggagaaaggcagtgtggacaagattttgaa |
7876 |
T |
|
| Q |
216 |
ggacaatgaacaagc |
230 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
7877 |
agacaatgaccaagc |
7891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 17027434 - 17027647
Alignment:
| Q |
16 |
caagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgctttgacagaaatccgac |
115 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||| | |||||| || ||| | |||||||||||| ||||||| | ||||| ||||||||||||| |
|
|
| T |
17027434 |
caagttgtagctgtgaagaaactccattcattacaacgtggagaaacgtccaatttgaaagcttttgcaagtgagatcaaagctttaacagaaatccgac |
17027533 |
T |
|
| Q |
116 |
atcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggtagcttggacaacattttgaa |
215 |
Q |
| |
|
|| | ||||||| |||||||| |||| ||||||||||| | | ||||||||||| |||||||| |||| ||||| ||||| | |||| |||||||| |
|
|
| T |
17027534 |
atagaaacattgctaagttatacgggtattgttcacatccattgcactcatttttagtttatgagctcct-gagaaaggtagtgttcacaatattttgaa |
17027632 |
T |
|
| Q |
216 |
ggacaatgaacaagc |
230 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
17027633 |
agacaatgagcaagc |
17027647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 17557926 - 17558139
Alignment:
| Q |
16 |
caagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgctttgacagaaatccgac |
115 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||| | |||||| || ||| | |||||||||||| ||||||| | ||||| ||||||||||||| |
|
|
| T |
17557926 |
caagttgtagctgtgaagaaactccattcattacaacgtggagaaacgtccaatttgaaagcttttgcaagtgagatcaaagctttaacagaaatccgac |
17558025 |
T |
|
| Q |
116 |
atcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggtagcttggacaacattttgaa |
215 |
Q |
| |
|
|| | ||||||| |||||||| |||| ||||||||||| | | ||||||||||| |||||||| |||| ||||| ||||| | |||| |||||||| |
|
|
| T |
17558026 |
atagaaacattgctaagttatacgggtattgttcacatccattgcactcatttttagtttatgagctcct-gagaaaggtagtgttcacaatattttgaa |
17558124 |
T |
|
| Q |
216 |
ggacaatgaacaagc |
230 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
17558125 |
agacaatgagcaagc |
17558139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 185
Target Start/End: Original strand, 37027396 - 37027481
Alignment:
| Q |
100 |
ttgacagaaatccgacatcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcct |
185 |
Q |
| |
|
|||||| ||||| |||||| |||||||| ||||||||||| ||||||||||||| || ||| | ||| |||||||||| ||||| |
|
|
| T |
37027396 |
ttgacacaaatcaaacatcgtaacattgtgaagttatatggattttgttcacatccacgccacgcttttgtggtttatgacttcct |
37027481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 5136 - 4999
Alignment:
| Q |
15 |
tcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgctttgacagaaatccga |
114 |
Q |
| |
|
|||||| || ||||| || |||||||||||| || |||||| || ||| |||||||| ||||||| |||||| | |||||||||||||| ||| |
|
|
| T |
5136 |
tcaagtagttgctgttaaaaaactccattcaataacaaatgcggaaaattctgatctaaaatgttttgcaaatgagatcaaagctttgacagaaattcga |
5037 |
T |
|
| Q |
115 |
catcgcaacattgtaaagttatatgggttttgttcaca |
152 |
Q |
| |
|
||| | |||||||| ||| ||||||| | ||||||||| |
|
|
| T |
5036 |
cattgtaacattgtgaagctatatggatattgttcaca |
4999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 13969 - 13832
Alignment:
| Q |
15 |
tcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgctttgacagaaatccga |
114 |
Q |
| |
|
|||||| || ||||| || |||||||||||| || |||||| || ||| |||||||| ||||||| |||||| | |||||||||||||| ||| |
|
|
| T |
13969 |
tcaagtagttgctgttaaaaaactccattcaataacaaatgcggaaaattctgatctaaaatgttttgcaaatgagatcaaagctttgacagaaattcga |
13870 |
T |
|
| Q |
115 |
catcgcaacattgtaaagttatatgggttttgttcaca |
152 |
Q |
| |
|
||| | |||||||| ||| ||||||| | ||||||||| |
|
|
| T |
13869 |
cattgtaacattgtgaagctatatggatattgttcaca |
13832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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