View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18377_low_1 (Length: 617)

Name: NF18377_low_1
Description: NF18377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18377_low_1
NF18377_low_1
[»] chr2 (12 HSPs)
chr2 (14-601)||(32097820-32098408)
chr2 (34-287)||(39536651-39536904)
chr2 (490-586)||(11513905-11513999)
chr2 (485-601)||(32106761-32106877)
chr2 (510-586)||(36852479-36852555)
chr2 (490-586)||(40158725-40158821)
chr2 (492-566)||(43529827-43529901)
chr2 (541-586)||(27288638-27288683)
chr2 (490-586)||(6993691-6993787)
chr2 (489-565)||(25661135-25661211)
chr2 (549-601)||(37034014-37034066)
chr2 (534-586)||(39983349-39983401)
[»] chr8 (11 HSPs)
chr8 (14-395)||(22568314-22568695)
chr8 (493-586)||(6509273-6509366)
chr8 (501-586)||(12361199-12361284)
chr8 (534-601)||(20672742-20672809)
chr8 (541-583)||(11795102-11795144)
chr8 (496-586)||(30259121-30259211)
chr8 (485-546)||(43709309-43709370)
chr8 (494-598)||(4560497-4560601)
chr8 (496-584)||(26479794-26479882)
chr8 (534-586)||(27028838-27028890)
chr8 (549-601)||(33553232-33553284)
[»] chr4 (8 HSPs)
chr4 (20-287)||(30905919-30906186)
chr4 (490-578)||(27123319-27123407)
chr4 (544-602)||(4191709-4191767)
chr4 (496-591)||(14011236-14011331)
chr4 (490-568)||(6987708-6987786)
chr4 (520-586)||(11802541-11802607)
chr4 (541-586)||(18628561-18628606)
chr4 (534-586)||(27721724-27721776)
[»] chr1 (9 HSPs)
chr1 (124-296)||(1551717-1551889)
chr1 (534-601)||(29834916-29834983)
chr1 (552-599)||(34422210-34422257)
chr1 (537-586)||(15515548-15515597)
chr1 (534-586)||(35179146-35179198)
chr1 (493-586)||(4548728-4548821)
chr1 (492-529)||(28467278-28467315)
chr1 (541-601)||(23373330-23373390)
chr1 (490-582)||(32515408-32515500)
[»] scaffold0024 (1 HSPs)
scaffold0024 (490-556)||(27613-27679)
[»] chr5 (16 HSPs)
chr5 (492-566)||(28586735-28586809)
chr5 (534-586)||(37588371-37588423)
chr5 (534-586)||(37690647-37690700)
chr5 (510-586)||(17777916-17777992)
chr5 (534-586)||(37526210-37526262)
chr5 (495-586)||(32172660-32172751)
chr5 (534-601)||(37611226-37611293)
chr5 (534-601)||(37787956-37788023)
chr5 (494-561)||(38728434-38728501)
chr5 (539-601)||(7096165-7096227)
chr5 (490-599)||(11457093-11457201)
chr5 (517-577)||(3504760-3504820)
chr5 (532-584)||(11684423-11684475)
chr5 (541-601)||(12242728-12242788)
chr5 (534-586)||(15074760-15074812)
chr5 (534-586)||(36638754-36638806)
[»] chr3 (7 HSPs)
chr3 (490-586)||(33965455-33965552)
chr3 (534-601)||(44284091-44284158)
chr3 (541-586)||(14548739-14548784)
chr3 (490-586)||(37273141-37273237)
chr3 (534-586)||(237404-237456)
chr3 (490-586)||(24603719-24603815)
chr3 (534-578)||(29427656-29427700)
[»] chr6 (7 HSPs)
chr6 (490-578)||(2460118-2460206)
chr6 (490-578)||(8420164-8420252)
chr6 (490-586)||(32171350-32171446)
chr6 (538-601)||(2205605-2205668)
chr6 (490-584)||(1015583-1015677)
chr6 (506-584)||(2455819-2455897)
chr6 (534-586)||(8010364-8010416)
[»] chr7 (5 HSPs)
chr7 (526-586)||(39505963-39506023)
chr7 (490-586)||(48157087-48157183)
chr7 (541-601)||(7244672-7244732)
chr7 (506-586)||(12792676-12792756)
chr7 (541-601)||(22551423-22551483)
[»] scaffold0003 (1 HSPs)
scaffold0003 (506-586)||(306333-306413)


Alignment Details
Target: chr2 (Bit Score: 557; Significance: 0; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 14 - 601
Target Start/End: Original strand, 32097820 - 32098408
Alignment:
Q  14 cagagatggagtatggtaggatgaacattggaagtcgaccggcaaagagaaggcctagtggaggcattgaaacactgcgtgcgataccatggatctttgc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32097820 cagagatggagtatggtaggatgaacattggaagtcgaccggcaaagagaaggcctagtggaggcattgaaacactgcgtgcgataccatggatctttgc 32097919  T
Q  114 ctggacacagacaaggtttcatcttccagtatggctaggctttggagcagcatttagacaagttgttcagaaggatgttaagaatctccatatgctgcaa 213  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32097920 ctggacacagacaaggtttcatcttccagtatggctgggctttggagcagcatttagacaagttgttcagaaggatgttaagaatctccatatgctgcaa 32098019  T
Q  214 gagatgtacaatcaatggcctttctttagggttacaattgatttagttgaaatggtgtttgccaagggagaccctggtattgccgcactgaatgataggc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32098020 gagatgtacaatcaatggcctttctttagggttacaattgatttagttgaaatggtgtttgccaagggagaccctggtattgccgcattgaatgataggc 32098119  T
Q  314 tcctagtttcaaaggatctgtggccatttggggaacagttgcgaagcaaatatgaagaaactaagaaactcctacttcaggtaatgatccttttactata 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32098120 tcctagtttcaaaggatctgtggccatttggggaacagttgcgaagcaaatatgaagaaactaagaaactcctacttcaggtaatgatccttttactata 32098219  T
Q  414 ttagttttggaccaa-ttttagtggttaagagcttatttgaatcacttatttgaacttatctatttgcataattattagactgtttgggagatcttatgg 512  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32098220 ttagttttggaccaatttttagtggttaagagcttatttggatcacttatttgaacttatctatttgcataatcattagactgtttgggagatcttatgg 32098319  T
Q  513 aaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctccataataacttatgaaaacactttgactttatttt 601  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32098320 aaatagcttatggcatgcctgtaagctattttcagcttatttccgtaagttctccataataacttatgaaaacactttgactttatttt 32098408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 34 - 287
Target Start/End: Complemental strand, 39536904 - 39536651
Alignment:
Q  34 atgaacattggaagtcgaccggcaaagagaaggcctagtggaggcattgaaacactgcgtgcgataccatggatctttgcctggacacagacaaggtttc 133  Q
    ||||||||||| ||||| ||  ||||  ||| ||| |||||||| || ||| |||| || || || || ||||| || || ||||| || ||||||||||    
T  39536904 atgaacattggcagtcgtccatcaaaacgaaagccaagtggaggaatcgaatcactccgagctattccttggattttcgcttggacgcaaacaaggtttc 39536805  T
Q  134 atcttccagtatggctaggctttggagcagcatttagacaagttgttcagaaggatgttaagaatctccatatgctgcaagagatgtacaatcaatggcc 233  Q
    || | ||||| ||||| || ||||||| |||||| |  || |   || |||| |||   |||||||| || ||||| || || |||||||||||||||||    
T  39536804 atttaccagtttggcttggttttggagaagcattcaagcatgcaattgagaaagatccaaagaatcttcaaatgcttcaggatatgtacaatcaatggcc 39536705  T
Q  234 tttctttagggttacaattgatttagttgaaatggtgtttgccaagggagaccc 287  Q
    ||||||||||||||| ||||| || ||||| ||||| || ||||||||||||||    
T  39536704 tttctttagggttaccattgacttggttgagatggttttcgccaagggagaccc 39536651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 490 - 586
Target Start/End: Complemental strand, 11513999 - 11513905
Alignment:
Q  490 agactgtttgggagatcttatggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    |||||||||  |||| |||||| ||| |||  ||||||||||| |||||||||||||| ||||||||  ||| ||||||| ||| ||||||||||||    
T  11513999 agactgttttagagagcttatgaaaacagc--atggcatgcctataagctattttcagcttatttccaaaagttctccatgatagcttatgaaaaca 11513905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 485 - 601
Target Start/End: Original strand, 32106761 - 32106877
Alignment:
Q  485 ttattagactgtttgggagatcttatggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctccataataacttatgaaaa 584  Q
    |||| |||||||||| |||| |||||| ||| |||||||| |||  ||||||||| ||||||  |||| | | |||||||| ||  |||||||||||||     
T  32106761 ttatgagactgtttgtgagaacttatgaaaacagcttatgacatatctgtaagctgttttcaaattatgttcataagctcttcaggataacttatgaaag 32106860  T
Q  585 cactttgactttatttt 601  Q
    || ||||| || |||||    
T  32106861 caatttgatttgatttt 32106877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 510 - 586
Target Start/End: Complemental strand, 36852555 - 36852479
Alignment:
Q  510 tggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    |||| ||| |||||| |||| || ||| |||||||||| |||||||| |||||||||||  ||| ||||||||||||    
T  36852555 tggatataacttatgacatgtctataaactattttcagattatttccataagctctccaagatagcttatgaaaaca 36852479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 490 - 586
Target Start/End: Complemental strand, 40158821 - 40158725
Alignment:
Q  490 agactgtttgggagatcttatggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    |||||| ||||| || |||||| ||| |||||||| ||||  | |||| | ||||||| ||| || | ||||||||||| |||||||||||||||||    
T  40158821 agactgattgggggaacttatgaaaacagcttatgacatgtttataagttgttttcagcttaattacataagctctccagaataacttatgaaaaca 40158725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 492 - 566
Target Start/End: Original strand, 43529827 - 43529901
Alignment:
Q  492 actgtttgggagatcttatggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctc 566  Q
    |||||||||||||  ||||| ||| |||||||| ||||    ||||||||||||||||||||| | |||||||||    
T  43529827 actgtttgggagaatttatgaaaacagcttatgccatgttcataagctattttcagtttattttcataagctctc 43529901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 586
Target Start/End: Complemental strand, 27288683 - 27288638
Alignment:
Q  541 ttttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    ||||||| |||||||||||| |||| ||| ||||||||||||||||    
T  27288683 ttttcagcttatttccgtaaactctacatgataacttatgaaaaca 27288638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 490 - 586
Target Start/End: Original strand, 6993691 - 6993787
Alignment:
Q  490 agactgtttgggagatcttatggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    ||||||||||  ||| |||||| ||||||||||||||||| |  ||||  ||||| || |||||| | ||||||||| |  ||| ||||||||||||    
T  6993691 agactgtttgatagaacttatgtaaatagcttatggcatgtccataagtcatttttagcttattttcataagctctcaagcatagcttatgaaaaca 6993787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 489 - 565
Target Start/End: Complemental strand, 25661211 - 25661135
Alignment:
Q  489 tagactgtttgggagatcttatggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctct 565  Q
    |||||||||||| ||| |||| ||||||||||||||  ||| |  ||| || ||||||| |||||||| ||||||||    
T  25661211 tagactgtttggcagagcttacggaaatagcttatgaaatgtccttaaactgttttcagattatttccataagctct 25661135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 601
Target Start/End: Complemental strand, 37034066 - 37034014
Alignment:
Q  549 ttatttccgtaagctctccataataacttatgaaaacactttgactttatttt 601  Q
    |||||||  |||||||||||||||| ||||||||||   ||||||||||||||    
T  37034066 ttatttctataagctctccataatatcttatgaaaatcgtttgactttatttt 37034014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 586
Target Start/End: Complemental strand, 39983401 - 39983349
Alignment:
Q  534 taagctattttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    ||||||||||||||||||||| | | |||||||||  ||| ||||||||||||    
T  39983401 taagctattttcagtttattttcattagctctccaggatagcttatgaaaaca 39983349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 170; Significance: 6e-91; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 14 - 395
Target Start/End: Original strand, 22568314 - 22568695
Alignment:
Q  14 cagagatggagtatggtaggatgaacattggaagtcgaccggcaaagagaaggcctagtggaggcattgaaacactgcgtgcgataccatggatctttgc 113  Q
    ||||| ||||||||||  | ||||| || ||||||||||| |||||| ||| ||| || ||||| ||||| || || ||||| || || |||||||||||    
T  22568314 cagagttggagtatggccgcatgaatatcggaagtcgacctgcaaagcgaaagccaagcggaggtattgagactctccgtgctattccttggatctttgc 22568413  T
Q  114 ctggacacagacaaggtttcatcttccagtatggctaggctttggagcagcatttagacaagttgttcagaaggatgttaagaatctccatatgctgcaa 213  Q
    ||||||||| |||||||||||||||||||| |||||||||||||| || ||||| |   | ||| || | |||||| |||  ||||| || ||||| |||    
T  22568414 ctggacacaaacaaggtttcatcttccagtgtggctaggctttggggccgcattcaagaatgttattgacaaggatattagaaatcttcaaatgcttcaa 22568513  T
Q  214 gagatgtacaatcaatggcctttctttagggttacaattgatttagttgaaatggtgtttgccaagggagaccctggtattgccgcactgaatgataggc 313  Q
    |||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||| |||||||| || ||| |||| ||||    
T  22568514 gagatgtacaatcaatggcctttctttagggtcactattgatttaattgaaatggtgtttgccaagggagacccaggtattgctgctctgtatgacaggc 22568613  T
Q  314 tcctagtttcaaaggatctgtggccatttggggaacagttgcgaagcaaatatgaagaaactaagaaactcctacttcaggt 395  Q
    |||| |||||||| ||||| ||| |||||||||| |||||| ||| ||||| ||||||||| ||||||||||||||||||||    
T  22568614 tccttgtttcaaacgatctatggtcatttggggagcagttgagaaccaaatttgaagaaaccaagaaactcctacttcaggt 22568695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 493 - 586
Target Start/End: Original strand, 6509273 - 6509366
Alignment:
Q  493 ctgtttgggagatcttatggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    ||||||| |||| ||||| |||| |||||||| ||||||| ||| |||||||||  |||||||  |||||||||||  ||| ||||||||||||    
T  6509273 ctgtttgagagagcttatagaaacagcttatgacatgcctataaactattttcaccttatttcaataagctctccaggatagcttatgaaaaca 6509366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 501 - 586
Target Start/End: Complemental strand, 12361284 - 12361199
Alignment:
Q  501 gagatcttatggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    |||||||||| ||||||||||||| |||| |  |||||| ||||||  |||||||| | ||||||||  |||||||||||||||||    
T  12361284 gagatcttatagaaatagcttatgacatgtccataagctgttttcaacttatttccattagctctcctgaataacttatgaaaaca 12361199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 601
Target Start/End: Complemental strand, 20672809 - 20672742
Alignment:
Q  534 taagctattttcagtttatttccgtaagctctccataataacttatgaaaacactttgactttatttt 601  Q
    |||||| ||||||| |||||| | |||||||||||  ||| ||||| |||||| ||||||||||||||    
T  20672809 taagctgttttcagcttattttcataagctctccaggatagcttataaaaacagtttgactttatttt 20672742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 541 - 583
Target Start/End: Complemental strand, 11795144 - 11795102
Alignment:
Q  541 ttttcagtttatttccgtaagctctccataataacttatgaaa 583  Q
    ||||||| |||||||| |||||||||||||||| |||||||||    
T  11795144 ttttcagcttatttccataagctctccataatagcttatgaaa 11795102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 496 - 586
Target Start/End: Complemental strand, 30259211 - 30259121
Alignment:
Q  496 tttgggagatcttatggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    |||| |||| |||||||||| ||||||||  ||| || |||| | |||||||||||||||| |||| ||||||  |||| |||| ||||||    
T  30259211 tttgagagagcttatggaaacagcttatgatatgtctataagttgttttcagtttatttccataagttctccaagataatttataaaaaca 30259121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 546
Target Start/End: Complemental strand, 43709370 - 43709309
Alignment:
Q  485 ttattagactgtttgggagatcttatggaaatagcttatggcatgcctgtaagctattttca 546  Q
    |||| ||| |||||||| || |||||||||||| |||||| |||| || |||||||||||||    
T  43709370 ttatgagagtgtttgggtgagcttatggaaataacttatgacatgtctataagctattttca 43709309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 598
Target Start/End: Complemental strand, 4560601 - 4560497
Alignment:
Q  494 tgtttgggagatcttatggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctccataataacttatgaaaacactttgac 593  Q
    ||||||| ||| |||||||||||| |||||  |||| | ||||||| ||||||| |||||||  ||||||||  |  ||| |||| ||||||| || |||    
T  4560601 tgtttggaagaacttatggaaataacttataacatgtcagtaagctgttttcagattatttcgataagctcttgaggataccttaagaaaacagttggac 4560502  T
Q  594 tttat 598  Q
    |||||    
T  4560501 tttat 4560497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 496 - 584
Target Start/End: Complemental strand, 26479882 - 26479794
Alignment:
Q  496 tttgggagatcttatggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctccataataacttatgaaaa 584  Q
    |||| |||| |||||||||| | |||||| |||| || |||| | |||||||  ||||||| ||||||||||| ||||  |||||||||    
T  26479882 tttgcgagagcttatggaaacaacttatgtcatgtctataagtttttttcagcgtatttccataagctctccagaataggttatgaaaa 26479794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 586
Target Start/End: Complemental strand, 27028890 - 27028838
Alignment:
Q  534 taagctattttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    |||||||||||||| |||||| | |||||||||||  ||| ||||||||||||    
T  27028890 taagctattttcagcttattttcataagctctccaagatagcttatgaaaaca 27028838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 601
Target Start/End: Complemental strand, 33553284 - 33553232
Alignment:
Q  549 ttatttccgtaagctctccataataacttatgaaaacactttgactttatttt 601  Q
    |||||||| |||||||| ||  ||| |||||||||||| ||||||||||||||    
T  33553284 ttatttccataagctcttcaagatagcttatgaaaacaatttgactttatttt 33553232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 8e-35; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 30906186 - 30905919
Alignment:
Q  20 tggagtatggtaggatgaacattggaagtcgaccggcaaagagaaggcctagtggaggcattgaaacactgcgtgcgataccatggatctttgcctggac 119  Q
    |||||||||| || ||||||||||| ||||| ||  ||||  ||| ||| |||||||| |||||| |||| ||||| || || |||||||||||||||||    
T  30906186 tggagtatggaagaatgaacattgggagtcgtccatcaaaacgaaagccaagtggaggaattgaatcactccgtgctatcccttggatctttgcctggac 30906087  T
Q  120 acagacaaggtttcatcttccagtatggctaggctttggagcagcatttagacaagttgttcagaaggatgttaagaatctccatatgctgcaagagatg 219  Q
     ||||||||||||||  | || |||||||| |||||||| || || || |  || ||  || ||||||||   ||||||||||| ||||| | ||| |||    
T  30906086 tcagacaaggtttcacttaccggtatggcttggctttggggcggcgttcaagcatgtaattgagaaggattcaaagaatctccaaatgcttcgagatatg 30905987  T
Q  220 tacaatcaatggcctttctttagggttacaattgatttagttgaaatggtgtttgccaagggagaccc 287  Q
    || ||||||||||| ||||| ||||| ||  |||| || ||||| |||||||||||||||||||||||    
T  30905986 tataatcaatggccattcttcagggtcacccttgacttggttgagatggtgtttgccaagggagaccc 30905919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 490 - 578
Target Start/End: Original strand, 27123319 - 27123407
Alignment:
Q  490 agactgtttgggagatcttatggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctccataataactta 578  Q
    |||||||||| |||| |||||||||| | |||||| |||| || |||| | ||||||  |||||||| |||||||||||||||| ||||    
T  27123319 agactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagctctccataatagctta 27123407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 544 - 602
Target Start/End: Complemental strand, 4191767 - 4191709
Alignment:
Q  544 tcagtttatttccgtaagctctccataataacttatgaaaacactttgactttattttt 602  Q
    |||| |||||||| || ||||||||  |||||||||||||||| |||||||||||||||    
T  4191767 tcagcttatttccatacgctctccaggataacttatgaaaacagtttgactttattttt 4191709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 591
Target Start/End: Complemental strand, 14011331 - 14011236
Alignment:
Q  496 tttgggagatcttatggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctccataataacttatgaaaacactttg 591  Q
    ||||||||| |||||| ||| || ||||  |||| || |||||| ||||||| |||||||| |||||||||||  ||| |||||| ||||| ||||    
T  14011331 tttgggagagcttatgcaaagagtttatcacatgtctttaagctgttttcagcttatttccataagctctccaagatagcttatgtaaacattttg 14011236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 490 - 568
Target Start/End: Original strand, 6987708 - 6987786
Alignment:
Q  490 agactgtttgggagatcttatggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctcca 568  Q
    ||||||||||||||| |||||||| | | |||||| |||| |  ||| |||||||||  |||||||| |||||||||||    
T  6987708 agactgtttgggagagcttatggatacaacttatgacatgtccataaactattttcaacttatttccataagctctcca 6987786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 586
Target Start/End: Complemental strand, 11802607 - 11802541
Alignment:
Q  520 ttatggcatgcctgtaagctattttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    |||||||||| |  |||||| ||||||| |||||  | |||||||||||||||| ||||||||||||    
T  11802607 ttatggcatggccataagctgttttcagcttattctcataagctctccataatagcttatgaaaaca 11802541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 586
Target Start/End: Original strand, 18628561 - 18628606
Alignment:
Q  541 ttttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    ||||||| |||||||| |||||||||||  ||||||||||||||||    
T  18628561 ttttcagcttatttccataagctctccaagataacttatgaaaaca 18628606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 586
Target Start/End: Complemental strand, 27721776 - 27721724
Alignment:
Q  534 taagctattttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    |||||| ||||||| |||||| || ||||||||||  ||||||||||||||||    
T  27721776 taagctgttttcagcttattttcgcaagctctccaggataacttatgaaaaca 27721724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 124 - 296
Target Start/End: Complemental strand, 1551889 - 1551717
Alignment:
Q  124 acaaggtttcatcttccagtatggctaggctttggagcagcatttagacaagttgttcagaaggatgttaagaatctccatatgctgcaagagatgtaca 223  Q
    |||||||||||| | ||||||||||| |||||||||| |||||| |  || ||  || |||| |||   ||||||||||| ||||| || || |||||||    
T  1551889 acaaggtttcatttaccagtatggcttggctttggagaagcattcaagcatgtgattgagaaagatccgaagaatctccaaatgcttcaggatatgtaca 1551790  T
Q  224 atcaatggcctttctttagggttacaattgatttagttgaaatggtgtttgccaagggagaccctggtattgc 296  Q
    ||||||| |||||||| || ||||| ||||| || ||||| ||||| |||||||| |||||||| || |||||    
T  1551789 atcaatgtcctttcttcagagttaccattgacttggttgagatggtttttgccaaaggagaccccgggattgc 1551717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 534 - 601
Target Start/End: Original strand, 29834916 - 29834983
Alignment:
Q  534 taagctattttcagtttatttccgtaagctctccataataacttatgaaaacactttgactttatttt 601  Q
    |||||| |||||| ||||||||| |||||||| ||| ||| |||||||||||| ||||||||||||||    
T  29834916 taagcttttttcaatttatttccataagctctacatgatagcttatgaaaacaatttgactttatttt 29834983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 552 - 599
Target Start/End: Original strand, 34422210 - 34422257
Alignment:
Q  552 tttccgtaagctctccataataacttatgaaaacactttgactttatt 599  Q
    ||||| ||||||||||||||| |||||||||||||||||||| |||||    
T  34422210 tttccataagctctccataattacttatgaaaacactttgacattatt 34422257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 537 - 586
Target Start/End: Complemental strand, 15515597 - 15515548
Alignment:
Q  537 gctattttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    |||||||||| ||||||||| |||||| ||||| ||||||||||||||||    
T  15515597 gctattttcaatttatttccataagctatccatgataacttatgaaaaca 15515548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 586
Target Start/End: Complemental strand, 35179198 - 35179146
Alignment:
Q  534 taagctattttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    |||||| ||||||| |||||| | |||| ||||||||||||||||||||||||    
T  35179198 taagctgttttcagcttattttcataagttctccataataacttatgaaaaca 35179146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 586
Target Start/End: Complemental strand, 4548821 - 4548728
Alignment:
Q  493 ctgtttgggagatcttatggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    ||||||| |||| || ||||||| | |||||| |||||||||||| | |||| || |||||| |  ||||||||||  ||| ||||||||||||    
T  4548821 ctgtttgagagacctaatggaaacaacttatgacatgcctgtaagttgtttttagcttattttctgaagctctccaagatagcttatgaaaaca 4548728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 529
Target Start/End: Original strand, 28467278 - 28467315
Alignment:
Q  492 actgtttgggagatcttatggaaatagcttatggcatg 529  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  28467278 actgtttgggagagcttatggaaatagctcatggcatg 28467315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 541 - 601
Target Start/End: Original strand, 23373330 - 23373390
Alignment:
Q  541 ttttcagtttatttccgtaagctctccataataacttatgaaaacactttgactttatttt 601  Q
    ||||||| ||||||| ||||||||| ||  ||| ||||||||||||  |||||||||||||    
T  23373330 ttttcagcttatttctgtaagctcttcaggatagcttatgaaaacagattgactttatttt 23373390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 490 - 582
Target Start/End: Original strand, 32515408 - 32515500
Alignment:
Q  490 agactgtttgggagatcttatggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctccataataacttatgaa 582  Q
    ||||||||||||||| |||||||||| ||| |||| |||| |  |||| | ||||||  |||| ||  |||||||||||| ||| ||||||||    
T  32515408 agactgtttgggagagcttatggaaacagcgtatgacatgtcaataagttgttttcaacttatatctataagctctccatgatagcttatgaa 32515500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 490 - 556
Target Start/End: Complemental strand, 27679 - 27613
Alignment:
Q  490 agactgtttgggagatcttatggaaatagcttatggcatgcctgtaagctattttcagtttatttcc 556  Q
    ||||||||||||||| ||||||||||||||||||| |||| || |||| | ||||||| ||||||||    
T  27679 agactgtttgggagagcttatggaaatagcttatgacatggctataagttgttttcagcttatttcc 27613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 492 - 566
Target Start/End: Original strand, 28586735 - 28586809
Alignment:
Q  492 actgtttgggagatcttatggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctc 566  Q
    ||||||||||||| ||||||||||||||||||| |||  | ||||||| ||||||| |||||||  |||||||||    
T  28586735 actgtttgggagagcttatggaaatagcttatgacatatccgtaagctgttttcagcttatttcgataagctctc 28586809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 534 - 586
Target Start/End: Original strand, 37588371 - 37588423
Alignment:
Q  534 taagctattttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    |||||| ||||||| |||||||| ||||||||||| |||||||||||||||||    
T  37588371 taagctgttttcagcttatttccataagctctccagaataacttatgaaaaca 37588423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 534 - 586
Target Start/End: Original strand, 37690647 - 37690700
Alignment:
Q  534 taagctattttcagtttatttccgtaagctctccataataac-ttatgaaaaca 586  Q
    |||||| ||||||| |||||||| |||||||||||||||||| |||||||||||    
T  37690647 taagctgttttcagcttatttccataagctctccataataactttatgaaaaca 37690700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 510 - 586
Target Start/End: Complemental strand, 17777992 - 17777916
Alignment:
Q  510 tggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    ||||||| ||||||| || | || |||||| |||| ||||||||||  |||||||||||  ||||||||||||||||    
T  17777992 tggaaattgcttatgacaagtctttaagctttttttagtttatttcgataagctctccaggataacttatgaaaaca 17777916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 586
Target Start/End: Original strand, 37526210 - 37526262
Alignment:
Q  534 taagctattttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    |||||| ||||||| |||||||| ||||||||||| || ||||||||||||||    
T  37526210 taagctgttttcagcttatttccataagctctccagaacaacttatgaaaaca 37526262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 586
Target Start/End: Complemental strand, 32172751 - 32172660
Alignment:
Q  495 gtttgggagatcttatggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    |||||||||| |||||||||| | |||||| |||| |  ||||| |||||||| |||||||| | || ||| ||| ||| ||||||||||||    
T  32172751 gtttgggagagcttatggaaacaacttatgacatgtccataagccattttcagcttatttccattagttcttcatgatagcttatgaaaaca 32172660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 601
Target Start/End: Original strand, 37611226 - 37611293
Alignment:
Q  534 taagctattttcagtttatttccgtaagctctccataataacttatgaaaacactttgactttatttt 601  Q
    |||||| ||||||| |||||||| |||||||||||  ||| |||||||||||| ||||| || |||||    
T  37611226 taagctgttttcaggttatttccataagctctccaagatagcttatgaaaacaatttgatttgatttt 37611293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 601
Target Start/End: Original strand, 37787956 - 37788023
Alignment:
Q  534 taagctattttcagtttatttccgtaagctctccataataacttatgaaaacactttgactttatttt 601  Q
    |||||| ||||||| |||||||| |||||||||||  ||| |||||||||||| ||||| || |||||    
T  37787956 taagctgttttcaggttatttccataagctctccaagatagcttatgaaaacaatttgatttgatttt 37788023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 494 - 561
Target Start/End: Complemental strand, 38728501 - 38728434
Alignment:
Q  494 tgtttgggagatcttatggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaag 561  Q
    ||||||||||| |||||| |||||||||||| |||||   |||||| ||||||| |||||||| ||||    
T  38728501 tgtttgggagagcttatgaaaatagcttatgacatgctcctaagctgttttcagcttatttccataag 38728434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 539 - 601
Target Start/End: Original strand, 7096165 - 7096227
Alignment:
Q  539 tattttcagtttatttccgtaagctctccataataacttatgaaaacactttgactttatttt 601  Q
    |||||| ||||||||| | ||||||||| |||||| ||||||||||   ||||||||||||||    
T  7096165 tatttttagtttatttacataagctctctataatagcttatgaaaatggtttgactttatttt 7096227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 599
Target Start/End: Complemental strand, 11457201 - 11457093
Alignment:
Q  490 agactgtttgggagatcttatggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctccataataacttatgaaaacactt 589  Q
    ||||||||| | ||| |||||||||| | |||||| |||| |  |||||| ||| ||  |||||||  |||||||||||  ||||||| |||||||| ||    
T  11457201 agactgttttgaagagcttatggaaacaacttatgacatgtccataagctgttt-catattatttctataagctctccaagataacttttgaaaacaatt 11457103  T
Q  590 tgactttatt 599  Q
    ||||||||||    
T  11457102 tgactttatt 11457093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 517 - 577
Target Start/End: Complemental strand, 3504820 - 3504760
Alignment:
Q  517 agcttatggcatgcctgtaagctattttcagtttatttccgtaagctctccataataactt 577  Q
    |||||||| ||||  |||||||| ||||||| |||||| | ||||||||||| ||||||||    
T  3504820 agcttatgacatgtttgtaagctgttttcagcttatttacataagctctccagaataactt 3504760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 532 - 584
Target Start/End: Complemental strand, 11684475 - 11684423
Alignment:
Q  532 tgtaagctattttcagtttatttccgtaagctctccataataacttatgaaaa 584  Q
    |||||||| ||||||  ||||||||||||||||||||  ||| ||||||||||    
T  11684475 tgtaagctgttttcaacttatttccgtaagctctccagcatagcttatgaaaa 11684423  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 541 - 601
Target Start/End: Original strand, 12242728 - 12242788
Alignment:
Q  541 ttttcagtttatttccgtaagctctccataataacttatgaaaacactttgactttatttt 601  Q
    ||||||| ||| |||| |||||||||||  ||| |||||||||||| ||||||| ||||||    
T  12242728 ttttcagcttacttccataagctctccaagatagcttatgaaaacaatttgactctatttt 12242788  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 586
Target Start/End: Original strand, 15074760 - 15074812
Alignment:
Q  534 taagctattttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    |||||| ||||||| |||||||| |||||| ||||  ||||||||||||||||    
T  15074760 taagctgttttcagcttatttccataagctttccagtataacttatgaaaaca 15074812  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 586
Target Start/End: Complemental strand, 36638806 - 36638754
Alignment:
Q  534 taagctattttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    |||||| ||||||| |||||||| ||||||||| |  ||||||||||||||||    
T  36638806 taagcttttttcagcttatttccataagctctctaggataacttatgaaaaca 36638754  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 490 - 586
Target Start/End: Original strand, 33965455 - 33965552
Alignment:
Q  490 agactgtttgggagatcttatggaaatagcttatggcatgcctgtaagctattttcag-tttatttccgtaagctctccataataacttatgaaaaca 586  Q
    ||||||||| ||||| |||||||||||||| |||| ||||||  |||| ||||||||| ||| ||||| |||||||| ||  ||| ||||||||||||    
T  33965455 agactgtttaggagaccttatggaaatagcatatgacatgcccataagttattttcagctttttttccataagctcttcaagatagcttatgaaaaca 33965552  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 534 - 601
Target Start/End: Original strand, 44284091 - 44284158
Alignment:
Q  534 taagctattttcagtttatttccgtaagctctccataataacttatgaaaacactttgactttatttt 601  Q
    |||||||||||||| |||||||  |||||||||||  ||| |||||||||||| ||||||||| ||||    
T  44284091 taagctattttcagcttatttctataagctctccaggatagcttatgaaaacagtttgactttgtttt 44284158  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 541 - 586
Target Start/End: Original strand, 14548739 - 14548784
Alignment:
Q  541 ttttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    ||||||| |||||||| ||||||||||| |||||||||||||||||    
T  14548739 ttttcagcttatttccataagctctccagaataacttatgaaaaca 14548784  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 490 - 586
Target Start/End: Complemental strand, 37273237 - 37273141
Alignment:
Q  490 agactgtttgggagatcttatggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    ||||||||||||||| |||||||||| | |||||| |||| |  |||| | ||||||  |||||||| |||| ||||||  ||| ||||||||||||    
T  37273237 agactgtttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataagttctccaagatagcttatgaaaaca 37273141  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 586
Target Start/End: Complemental strand, 237456 - 237404
Alignment:
Q  534 taagctattttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    |||||| ||||||| |||||||||||||||||  |  ||||||||||||||||    
T  237456 taagctgttttcagcttatttccgtaagctctataggataacttatgaaaaca 237404  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 490 - 586
Target Start/End: Original strand, 24603719 - 24603815
Alignment:
Q  490 agactgtttgggagatcttatggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    ||||||||||||||| ||||| |||| || ||||| ||||||  |||||| ||||||   ||||||| ||||  |||||  |||||||||| |||||    
T  24603719 agactgtttgggagaacttattgaaacagtttatgacatgcccataagctgttttcaagatatttccataagtcctccaagataacttatggaaaca 24603815  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 578
Target Start/End: Original strand, 29427656 - 29427700
Alignment:
Q  534 taagctattttcagtttatttccgtaagctctccataataactta 578  Q
    |||||||||||||  |||||||||||| |||||||||| ||||||    
T  29427656 taagctattttcaacttatttccgtaatctctccataacaactta 29427700  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 490 - 578
Target Start/End: Original strand, 2460118 - 2460206
Alignment:
Q  490 agactgtttgggagatcttatggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctccataataactta 578  Q
    |||||||||| |||| |||||||||| | |||||| |||| || |||| | ||||||  |||||||| |||||||||||||||| ||||    
T  2460118 agactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagctctccataatagctta 2460206  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 490 - 578
Target Start/End: Original strand, 8420164 - 8420252
Alignment:
Q  490 agactgtttgggagatcttatggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctccataataactta 578  Q
    |||||||| | |||| ||||| ||||||||||||| |||| |   ||||||||||||  |||||||| |||||||||||| ||| ||||    
T  8420164 agactgttagtgagagcttatagaaatagcttatgacatgtccacaagctattttcaacttatttccataagctctccattatagctta 8420252  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 490 - 586
Target Start/End: Original strand, 32171350 - 32171446
Alignment:
Q  490 agactgtttgggagatcttatggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    |||||||||| |||| |||||| ||| |||||||| || | |   ||||||||||||| |||||||| |||||| ||||  |||||| |||||||||    
T  32171350 agactgtttgagagagcttatgaaaacagcttatgacaagtccagaagctattttcagcttatttccataagctatccaggataactaatgaaaaca 32171446  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 538 - 601
Target Start/End: Original strand, 2205605 - 2205668
Alignment:
Q  538 ctattttcagtttatttccgtaagctctccataataacttatgaaaacactttgactttatttt 601  Q
    |||| ||||| |||||||| |||||||||||  ||| |||||||||||| ||||||||| ||||    
T  2205605 ctatattcagcttatttccataagctctccaagatagcttatgaaaacaatttgactttgtttt 2205668  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 490 - 584
Target Start/End: Complemental strand, 1015677 - 1015583
Alignment:
Q  490 agactgtttgggagatcttatggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctccataataacttatgaaaa 584  Q
    ||||| |||| |||| ||||||||||||| |||||| |||   | ||||| |||| || || ||||| |||||||||||| ||||||||| ||||    
T  1015677 agactctttgtgagagcttatggaaatagtttatggtatgtacgaaagctgttttgagcttttttccataagctctccatgataacttatcaaaa 1015583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 506 - 584
Target Start/End: Complemental strand, 2455897 - 2455819
Alignment:
Q  506 cttatggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctccataataacttatgaaaa 584  Q
    |||||||||| | |||||| ||||||  ||| |||||||||  |||||||| |||||||||||  ||| ||||||||||    
T  2455897 cttatggaaacaacttatgacatgcccataaactattttcaacttatttccataagctctccaagatagcttatgaaaa 2455819  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 586
Target Start/End: Complemental strand, 8010416 - 8010364
Alignment:
Q  534 taagctattttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    ||||||||||||||||||||||  |||| ||||||  ||||||||| ||||||    
T  8010416 taagctattttcagtttatttctataagttctccaggataacttattaaaaca 8010364  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 586
Target Start/End: Complemental strand, 39506023 - 39505963
Alignment:
Q  526 catgcctgtaagctattttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    |||| ||| ||||||||||||| |||||||| ||| ||||||| |||| ||||||||||||    
T  39506023 catgtctggaagctattttcagcttatttccataaactctccagaatagcttatgaaaaca 39505963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 490 - 586
Target Start/End: Original strand, 48157087 - 48157183
Alignment:
Q  490 agactgtttgggagatcttatggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    ||||||||||||||| ||||| |||| | |||||| |||| |  |||||| ||||||| |||||||| |||| |||||  |||| ||| ||||||||    
T  48157087 agactgtttgggagagcttatagaaacaacttatgccatgtccataagctgttttcagcttatttccataagatctcccgaatagcttgtgaaaaca 48157183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 541 - 601
Target Start/End: Complemental strand, 7244732 - 7244672
Alignment:
Q  541 ttttcagtttatttccgtaagctctccataataacttatgaaaacactttgactttatttt 601  Q
    ||||||| |||||| | |||||||||||  ||| |||||||||||| ||||||||| ||||    
T  7244732 ttttcagcttattttcataagctctccaatatagcttatgaaaacagtttgactttctttt 7244672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 506 - 586
Target Start/End: Original strand, 12792676 - 12792756
Alignment:
Q  506 cttatggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    |||||| |||||||||||   ||| || ||| || ||||||| ||||||||||||||||| || |||| ||||| ||||||    
T  12792676 cttatgaaaatagcttatacaatgtctataaactgttttcagcttatttccgtaagctcttcagaatagcttatcaaaaca 12792756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 541 - 601
Target Start/End: Original strand, 22551423 - 22551483
Alignment:
Q  541 ttttcagtttatttccgtaagctctccataataacttatgaaaacactttgactttatttt 601  Q
    ||||||| |||||| | |||||||||||  || ||||||||||| | ||||||||||||||    
T  22551423 ttttcagcttatttacataagctctccaagattacttatgaaaagaatttgactttatttt 22551483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 506 - 586
Target Start/End: Complemental strand, 306413 - 306333
Alignment:
Q  506 cttatggaaatagcttatggcatgcctgtaagctattttcagtttatttccgtaagctctccataataacttatgaaaaca 586  Q
    |||||||||| |||||||| ||||||  |||||| ||||||| ||| || | ||||||||| |  ||| ||||||||||||    
T  306413 cttatggaaacagcttatgacatgcccataagctgttttcagcttacttacataagctctctaggatagcttatgaaaaca 306333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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