View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18377_low_11 (Length: 230)
Name: NF18377_low_11
Description: NF18377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18377_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 6912597 - 6912663
Alignment:
| Q |
11 |
cgaagaaaatatatttccaaaaacatgtgaatatttttaaaagaaatgtaatttgtacaacaatttt |
77 |
Q |
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| T |
6912597 |
cgaacaaaatatatttccaaaaacatgtgaatatttttaaaagaaatgttatttgtacaaccatttt |
6912663 |
T |
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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 6912749 - 6912793
Alignment:
| Q |
172 |
ccaataagaaataaaaagagagctaaataaggttatcacaaaaat |
216 |
Q |
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| T |
6912749 |
ccaataaaaaataagaagagagctaaataaggttatcacaaaaat |
6912793 |
T |
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