View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18377_low_3 (Length: 430)
Name: NF18377_low_3
Description: NF18377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18377_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 8 - 398
Target Start/End: Complemental strand, 5384896 - 5384510
Alignment:
| Q |
8 |
acatcatcatgtcaatgatcaagaatgtccacctacgttgccatgaccgaaatatgatatcacagttgactccaaagtcttgaattagaggaatgagtga |
107 |
Q |
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| T |
5384896 |
acatcatcatgtcaatgatcaagaatgtccacctacgttgccatgaccgaaatatgatatcacagttgactccaaagtcttaaattagaggaatgcgtga |
5384797 |
T |
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| Q |
108 |
tctcatgaagtccgcaagtttgactcagccatagtatgattaaaattttaaacttacagnnnnnnnnnnnnaggaaaaacttgcacagttaatacagtta |
207 |
Q |
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| T |
5384796 |
tctcatgaagtcagcaagtttgactcagccatagtatgattaaaattttaaacttacagtttttattttttagggaaaacttgcgcagttaatactgtta |
5384697 |
T |
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| Q |
208 |
aaaaggaaagaaaattttctctaaaagaaacatttaaaagggaatagaggaaatacaatttacacgacactgaagaaaagttagcatcaatcattggtgc |
307 |
Q |
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| T |
5384696 |
aaaaggaacgaaaattttctctaaaagaaacacttaaaaaggaatagaggaaatacaatttacacaacactgaagaaaagttagcatcaatcatcggtgc |
5384597 |
T |
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| Q |
308 |
attatgtaatttttcaactaaatctagaagaacaagtccgagtgttgaagaaataccgatgactattagcagcattcacaatgcgcataca |
398 |
Q |
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| T |
5384596 |
attatgtaatttttcaact-aatctagaagaacaagtccgagtgttgaagaaataccgatgactatt---agcattcacaatgcgcataca |
5384510 |
T |
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