View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18377_low_4 (Length: 398)
Name: NF18377_low_4
Description: NF18377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18377_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 391
Target Start/End: Original strand, 33897512 - 33897884
Alignment:
| Q |
19 |
cgttattgaatccaaacccttgattattcttcaccaaaaccactcttttttccttcttgcaccccttttcttcacacatacctccatttttaaacactgc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33897512 |
cgttattgaatccaaacccttgattattcttcaccaaaaccactcttttttccttcttgcaccccttttcttcacacatacctccatttttaaacactgc |
33897611 |
T |
|
| Q |
119 |
acctcccaaaaaagaccacctatccctgcatgctctcaacttgaaactacccagatgaaaagaattaaactttgggtctaaattggagaaagaaaaggtg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33897612 |
acctcccaaaaaagaccacctatccctgcatgctctcaacttgaaactacccagatgaaaagaattaaactttgggtctaaattggagaaagaaaaagtg |
33897711 |
T |
|
| Q |
219 |
ggttgtgtcttgtatatgctatcattgggtttcaagtgtgaaaatttgatggagaattgtacaagagtggacatggggaatattgaataagggtgaagta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33897712 |
ggttgtgtcttgtatatgctatcattgggtttcaagtgtgaaaatttgatggagaattgtacaagagtggacatggggaatattgaataagggtgaagta |
33897811 |
T |
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| Q |
319 |
aaatcttagtgtacttatggagttagaaaaggtttagacatgtcgaatggaacattgcagatgatgatgatgt |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33897812 |
aaatcttagtgtacttatggagttagaaaaggtttagacatgtcgaatggaacattgtagatgatgatgatgt |
33897884 |
T |
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