View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18377_low_5 (Length: 365)
Name: NF18377_low_5
Description: NF18377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18377_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 13 - 346
Target Start/End: Original strand, 5776562 - 5776895
Alignment:
| Q |
13 |
gagagaaatgttgaaggaaaataaggatgcaaaattcatattaacagggcatagtttgggtggagcattggctattctgtttgtcgcaatgcttatattc |
112 |
Q |
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| T |
5776562 |
gagagaaatgttgaaggaaaataaggatgcaaaattcatattaacagggcatagtttgggtggagcattggctattctgtttgtcgcaatgcttatattc |
5776661 |
T |
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| Q |
113 |
catgaggaagaagacatgttggataagttacaaggtgtttatacatttgggcaaccaagagtaggagacgagaagtttggggagttcatgaaaagcaact |
212 |
Q |
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| T |
5776662 |
catgaggaagaagacatgttggataagttacaaggtgtttatacatttgggcaaccaagagtaggagacgagaagtttggggagttcatgaaaagcaagt |
5776761 |
T |
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| Q |
213 |
tgaaaaagtatgatgtgaagtattttagatatgtttactctaatgatatggttccaagggtcccttatgatgacaaatccctcttctttaagcacttcag |
312 |
Q |
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| T |
5776762 |
tgaaaaagtatgatgtgaagtattttagatatgtttactctaatgatatggttccaagggtcccttatgatgacaaatccctcttctttaagcacttcag |
5776861 |
T |
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| Q |
313 |
tcctagtctctttttcaacagcttgtaccaaggg |
346 |
Q |
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| T |
5776862 |
tcctagtctctttttcaacagcttgtaccaaggg |
5776895 |
T |
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