View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18377_low_6 (Length: 300)
Name: NF18377_low_6
Description: NF18377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18377_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 286
Target Start/End: Complemental strand, 8929572 - 8929303
Alignment:
| Q |
17 |
cagctccattgcttttgccaagagaaacaagggaaaagtgcattgtaggtggctaccatattcctgcaaaaacaatagtatatgtgaatgcttggtctat |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8929572 |
cagctccattgcttttgccaagagaaacaagggaaaagtgcattgtaggtggctaccatattcctgcaaaaacaatagtatatgtgaatgcttggtctat |
8929473 |
T |
|
| Q |
117 |
tcatagagactctgaaatttggaaagatccggaagagttttatcctgagagattcttagagagttctataaattttcttggacatgattttgaattaatt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8929472 |
tcatagagactctgaaatttggaaagatccggaagagttttatcctgagagattcttagagagttctataaattttcttggacatgattttgaattaatt |
8929373 |
T |
|
| Q |
217 |
ccgtttggagcaggccgtagaatttgcccaggtatttctgttgcagttgcatcgttggaacttacccttg |
286 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8929372 |
ccgtttggagcaggccgtagaatttgcccaggtatttctgttgcagttgcatcgttggaacttacccttg |
8929303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 22 - 286
Target Start/End: Complemental strand, 8900740 - 8900476
Alignment:
| Q |
22 |
ccattgcttttgccaagagaaacaagggaaaagtgcattgtaggtggctaccatattcctgcaaaaacaatagtatatgtgaatgcttggtctattcata |
121 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||| || |||||||||| ||||||||||| | || || | ||||||||||||| ||||||||| |
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| T |
8900740 |
ccattgcttgtgccaagagaaacaagggaaaagtgcattataagtggctaccaaattcctgcaaaggcgattgtgtttgtgaatgcttgggctattcata |
8900641 |
T |
|
| Q |
122 |
gagactctgaaatttggaaagatccggaagagttttatcctgagagattcttagagagttctataaattttcttggacatgattttgaattaattccgtt |
221 |
Q |
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|||| | || |||||||| | || ||||||||||||||||| ||||| ||||| ||||||||||||||| |||||| ||||||||| ||||||| || |
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| T |
8900640 |
cagacccagatgtttggaaaaacccagaagagttttatcctgaaagatttttagaaagttctataaatttttatggacaagattttgaactaattccctt |
8900541 |
T |
|
| Q |
222 |
tggagcaggccgtagaatttgcccaggtatttctgttgcagttgcatcgttggaacttacccttg |
286 |
Q |
| |
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|||||| || |||||||||||||||||||| ||| | ||||||||||| |||||| ||| ||||| |
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| T |
8900540 |
tggagccggtcgtagaatttgcccaggtatgtctatggcagttgcatcattggaagttatccttg |
8900476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 34 - 269
Target Start/End: Complemental strand, 8966406 - 8966171
Alignment:
| Q |
34 |
ccaagagaaacaagggaaaagtgcattgtaggtggctaccatattcctgcaaaaacaatagtatatgtgaatgcttggtctattcatagagactctgaaa |
133 |
Q |
| |
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||||||||| |||| |||||||||||| || |||| ||| | ||||| || || |||||||| ||||||||||||||| ||||||| |||||| | | |
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| T |
8966406 |
ccaagagaatcaagagaaaagtgcattataagtggttacaagattccagccaacacaatagtgtatgtgaatgcttgggctattcaaagagacccaagta |
8966307 |
T |
|
| Q |
134 |
tttggaaagatccggaagagttttatcctgagagattcttagagagttctataaattttcttggacatgattttgaattaattccgtttggagcaggccg |
233 |
Q |
| |
|
||||||| |||| |||||||||||||| ||||||||||| || |||| | |||||||||||||| ||||||||||| ||||||||||||||||| || |
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| T |
8966306 |
attggaaaaatccagaagagttttatcccgagagattcttggaatgttcgacgaattttcttggacaagattttgaatttattccgtttggagcaggtcg |
8966207 |
T |
|
| Q |
234 |
tagaatttgcccaggtatttctgttgcagttgcatc |
269 |
Q |
| |
|
||||||||| |||||||| ||| | | ||||||||| |
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|
| T |
8966206 |
tagaatttgtccaggtatatctatgggagttgcatc |
8966171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 36 - 286
Target Start/End: Complemental strand, 9000314 - 9000064
Alignment:
| Q |
36 |
aagagaaacaagggaaaagtgcattgtaggtggctaccatattcctgcaaaaacaatagtatatgtgaatgcttggtctattcatagagactctgaaatt |
135 |
Q |
| |
|
||||||| || | ||||| |||| | || |||| ||| ||||||| || || |||||| | ||||||||||||||| ||||||| |||||| || | || |
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| T |
9000314 |
aagagaatcacgtgaaaattgcactataagtggatacaatattccagccaagacaatattgtatgtgaatgcttgggctattcagagagaccctaatgtt |
9000215 |
T |
|
| Q |
136 |
tggaaagatccggaagagttttatcctgagagattcttagagagttctataaattttcttggacatgattttgaattaattccgtttggagcaggccgta |
235 |
Q |
| |
|
|||||| |||| ||||| ||||||||||| ||||||||||| ||||||||||||||| |||||| ||||||||| |||| || |||||||| || |||| |
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|
| T |
9000214 |
tggaaaaatccagaagaattttatcctgaaagattcttagaaagttctataaattttaatggacaagattttgaactaataccctttggagctggtcgta |
9000115 |
T |
|
| Q |
236 |
gaatttgcccaggtatttctgttgcagttgcatcgttggaacttacccttg |
286 |
Q |
| |
|
|||||||||||||||| || | |||||||| || |||||||||| ||||| |
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| T |
9000114 |
gaatttgcccaggtatgcctatggcagttgcctcattggaacttatccttg |
9000064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 8914650 - 8914398
Alignment:
| Q |
17 |
cagctccattgcttttgccaagagaaacaagggaaaagtgcattgtaggtggctaccatattcctgcaaaaacaatagtatatgtgaatgcttggtctat |
116 |
Q |
| |
|
|||| ||||||||| |||||||||||||| ||||| |||| | || ||||| ||| ||||| ||||| | ||||| | ||||||||||||| |||| |
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|
| T |
8914650 |
cagccccattgcttgcgccaagagaaacaactgaaaaatgcactataaatggcttccaaattcccgcaaaggcgatagtgtttgtgaatgcttgggctat |
8914551 |
T |
|
| Q |
117 |
tcatagagactctgaaatttggaaagatccggaagagttttatcctgagagattcttagagagttctataaattttcttggacatgattttgaattaatt |
216 |
Q |
| |
|
||||| |||||| | |||||||| | || ||||| |||||||| |||||||| ||||| |||||| ||||||||| |||||| ||||||||| ||||| |
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| T |
8914550 |
tcatacagactcaaatgtttggaaaaacccagaagaattttatccagagagatttttagaaagttctttaaattttcatggacaagattttgaactaatt |
8914451 |
T |
|
| Q |
217 |
ccgtttggagcaggccgtagaatttgcccaggtatttctgttgcagttgcatc |
269 |
Q |
| |
|
|| |||||||| || ||||||||||| |||||||| ||| | ||||||||||| |
|
|
| T |
8914450 |
ccttttggagccggtcgtagaatttgtccaggtatgtctatggcagttgcatc |
8914398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 76 - 286
Target Start/End: Original strand, 8955000 - 8955210
Alignment:
| Q |
76 |
attcctgcaaaaacaatagtatatgtgaatgcttggtctattcatagagactctgaaatttggaaagatccggaagagttttatcctgagagattcttag |
175 |
Q |
| |
|
||||||||||| |||||| ||||||| ||||||||| ||||||| ||||| | || ||||||| | | || ||||| |||||||||||||||||||||| |
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|
| T |
8955000 |
attcctgcaaagacaatattatatgtaaatgcttgggctattcagagagatccagatatttggataaacccagaagaattttatcctgagagattcttag |
8955099 |
T |
|
| Q |
176 |
agagttctataaattttcttggacatgattttgaattaattccgtttggagcaggccgtagaatttgcccaggtatttctgttgcagttgcatcgttgga |
275 |
Q |
| |
|
| ||||||||||||||| ||||||| || |||||| |||| || |||||||| || |||||||||||||| ||||| || | ||| | || |||||||| |
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|
| T |
8955100 |
aaagttctataaattttattggacaagactttgaactaataccctttggagctggtcgtagaatttgccccggtatacctatggcaatcgcctcgttgga |
8955199 |
T |
|
| Q |
276 |
acttacccttg |
286 |
Q |
| |
|
||||| ||||| |
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| T |
8955200 |
acttatccttg |
8955210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 286
Target Start/End: Original strand, 8979277 - 8979546
Alignment:
| Q |
17 |
cagctccattgcttttgccaagagaaacaagggaaaagtgcattgtaggtggctaccatattcctgcaaaaacaatagtatatgtgaatgcttggtctat |
116 |
Q |
| |
|
|||||||| ||||| | ||||||||| ||||||||| |||||| | ||||||| ||||||| || |||||||| | ||||| || | ||| |||| |
|
|
| T |
8979277 |
cagctccactgcttgtaccaagagaatcaagggaaacatgcattatcaatggctacaatattccagcccaaacaatattgtatgtaaacgtctgggctat |
8979376 |
T |
|
| Q |
117 |
tcatagagactctgaaatttggaaagatccggaagagttttatcctgagagattcttagagagttctataaattttcttggacatgattttgaattaatt |
216 |
Q |
| |
|
||| ||||| || | | ||||||| |||| ||||| |||||||| ||||||||| |||| ||||||||||||||| ||||||||||||| ||| |||| |
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|
| T |
8979377 |
tcaaagagatcctaatacttggaaaaatccagaagaattttatcccgagagattcatagaaagttctataaattttattggacatgatttcgaactaata |
8979476 |
T |
|
| Q |
217 |
ccgtttggagcaggccgtagaatttgcccaggtatttctgttgcagttgcatcgttggaacttacccttg |
286 |
Q |
| |
|
|| |||||||| || ||||||||||| || || || ||| | ||||||||||| |||||||||| ||||| |
|
|
| T |
8979477 |
ccctttggagctggtcgtagaatttgtcctggcatgtctatggcagttgcatcattggaacttatccttg |
8979546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 88 - 245
Target Start/End: Original strand, 9030862 - 9031019
Alignment:
| Q |
88 |
acaatagtatatgtgaatgcttggtctattcatagagactctgaaatttggaaagatccggaagagttttatcctgagagattcttagagagttctataa |
187 |
Q |
| |
|
|||||| | ||||||||||||||| ||||||| |||||| | | ||||| || | | ||||| ||||||||||| ||||||||||| |||||||||| |
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|
| T |
9030862 |
acaatattgtatgtgaatgcttgggctattcagagagaccataatgtttgggaaaacgcagaagaattttatcctgaaagattcttagaaagttctataa |
9030961 |
T |
|
| Q |
188 |
attttcttggacatgattttgaattaattccgtttggagcaggccgtagaatttgccc |
245 |
Q |
| |
|
||||| |||||| ||||||||| |||| || |||||||| ||||||||||||||||| |
|
|
| T |
9030962 |
attttactggacaagattttgaactaataccctttggagctggccgtagaatttgccc |
9031019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 21 - 286
Target Start/End: Complemental strand, 9400438 - 9400173
Alignment:
| Q |
21 |
tccattgcttttgccaagagaaacaagggaaaagtgcattgtaggtggctaccatattcctgcaaaaacaatagtatatgtgaatgcttggtctattcat |
120 |
Q |
| |
|
||||||||| ||||||| || ||| ||||| ||||| | ||||||| ||||| ||||| ||||| |||||||| ||||||||||||||| |||||||| |
|
|
| T |
9400438 |
tccattgctactgccaagggagtcaatggaaatgtgcactataggtggttaccagattccagcaaagacaatagtgtatgtgaatgcttgggctattcat |
9400339 |
T |
|
| Q |
121 |
agagactctgaaatttggaaagatccggaagagttttatcctgagagattcttagagagttctataaattttcttggacatgattttgaattaattccgt |
220 |
Q |
| |
|
||||||||| | ||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| || |||||||| ||||| | |
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|
| T |
9400338 |
agagactctaatgtttggaaagatccagaagagttttatccagagagattcttagaaagttctataaattttcttggacaagactttgaatttattccct |
9400239 |
T |
|
| Q |
221 |
ttggagcaggccgtagaatttgcccaggtatttctgttgcagttgcatcgttggaacttacccttg |
286 |
Q |
| |
|
||||| | || || |||||||| ||||| |||||| | ||||||||||| |||||||||| ||||| |
|
|
| T |
9400238 |
ttggatctggacgaagaatttgtccaggcatttctatggcagttgcatcattggaacttatccttg |
9400173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 17 - 286
Target Start/End: Complemental strand, 20074204 - 20073935
Alignment:
| Q |
17 |
cagctccattgcttttgccaagagaaacaagggaaaagtgcattgtaggtggctaccatattcctgcaaaaacaatagtatatgtgaatgcttggtctat |
116 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||| | ||||||||||||| ||||| ||||| | |||| | ||||||||||||| |||| |
|
|
| T |
20074204 |
cagccccattgcttgtgccaagagaaacaagggaaaagtgcactataggtggctaccaaattccggcaaaggcggtagtgtttgtgaatgcttgggctat |
20074105 |
T |
|
| Q |
117 |
tcatagagactctgaaatttggaaagatccggaagagttttatcctgagagattcttagagagttctataaattttcttggacatgattttgaattaatt |
216 |
Q |
| |
|
||||| |||| || | |||||||| |||| ||||| ||||||||||||||||| ||||| ||||| |||||||||| ||||| ||||||||| ||||| |
|
|
| T |
20074104 |
tcatacagaccctaatgtttggaaaaatccagaagaattttatcctgagagatttttagaaagttcgataaattttcacggacaagattttgaactaatt |
20074005 |
T |
|
| Q |
217 |
ccgtttggagcaggccgtagaatttgcccaggtatttctgttgcagttgcatcgttggaacttacccttg |
286 |
Q |
| |
|
|| |||||||| || ||||||||||| |||||||| ||| | ||||||||||| | ||||||| ||||| |
|
|
| T |
20074004 |
ccctttggagccggtcgtagaatttgtccaggtatgtctatggcagttgcatcactcgaacttatccttg |
20073935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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