View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18377_low_7 (Length: 293)
Name: NF18377_low_7
Description: NF18377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18377_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 46304440 - 46304551
Alignment:
| Q |
19 |
tgatcatgaaaagacactcattgagtaaaaaagaaagccctaatccagaaagaaagagactaaccagaaacgtgatcgggagagataggagagtgaatat |
118 |
Q |
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| T |
46304440 |
tgatcatgaaaagacactcattcagtaaaaaagaaagccctaatccagaaagaaagagactaaccagaaacgtgatcgggagagataggtgagtgaatat |
46304539 |
T |
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| Q |
119 |
cagcaacccttc |
130 |
Q |
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| T |
46304540 |
cagcaacccttc |
46304551 |
T |
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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 46304708 - 46304785
Alignment:
| Q |
136 |
ccaatattcatcactttttgtctaaagatccaattactaattaatttgtctctattctctagaaccctaatttcaacatat |
216 |
Q |
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| T |
46304708 |
ccaatattcatcactttttgtctatagatccaattacta---aatttatctctattctctacaaccctaatttcaacatat |
46304785 |
T |
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