View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18377_low_8 (Length: 283)

Name: NF18377_low_8
Description: NF18377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18377_low_8
NF18377_low_8
[»] chr1 (12 HSPs)
chr1 (1-153)||(15002959-15003111)
chr1 (1-153)||(15011852-15012004)
chr1 (1-148)||(15017967-15018114)
chr1 (1-149)||(14521736-14521884)
chr1 (1-153)||(15037871-15038023)
chr1 (1-153)||(15041439-15041593)
chr1 (1-153)||(14531853-14532005)
chr1 (1-152)||(15033304-15033455)
chr1 (1-146)||(14468655-14468803)
chr1 (1-146)||(14483603-14483751)
chr1 (1-151)||(14504834-14504987)
chr1 (209-254)||(14521631-14521676)
[»] scaffold0400 (2 HSPs)
scaffold0400 (1-153)||(13640-13792)
scaffold0400 (1-151)||(7340-7490)
[»] scaffold0365 (2 HSPs)
scaffold0365 (1-153)||(14283-14435)
scaffold0365 (1-151)||(7984-8134)
[»] chr8 (2 HSPs)
chr8 (1-146)||(17028692-17028837)
chr8 (1-146)||(17559128-17559273)
[»] chr7 (9 HSPs)
chr7 (1-151)||(15676187-15676337)
chr7 (1-146)||(15664357-15664502)
chr7 (1-146)||(17849380-17849525)
chr7 (1-153)||(17825206-17825358)
chr7 (1-151)||(16173409-16173559)
chr7 (1-85)||(14606756-14606840)
chr7 (1-85)||(16025933-16026017)
chr7 (7-85)||(16103747-16103825)
chr7 (1-85)||(31103483-31103567)
[»] scaffold0289 (2 HSPs)
scaffold0289 (1-143)||(13519-13661)
scaffold0289 (1-49)||(4780-4828)
[»] chr5 (1 HSPs)
chr5 (1-90)||(37027619-37027708)


Alignment Details
Target: chr1 (Bit Score: 149; Significance: 9e-79; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 15002959 - 15003111
Alignment:
Q  1 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15002959 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagattttggaacatctaagtttctaaatcccaattcgtc 15003058  T
Q  101 caatatgacttcttttgcaggcacctttggatatgctgctccaggtcaattcc 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15003059 caatatgacttcttttgcaggcacctttggatatgctgctccaggtcaattcc 15003111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 15011852 - 15012004
Alignment:
Q  1 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  15011852 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcatc 15011951  T
Q  101 caatatgacttcttttgcaggcacctttggatatgctgctccaggtcaattcc 153  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15011952 caatatgacttcttttgcaggcacctttggatatgccgctccaggtcaattcc 15012004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 15017967 - 15018114
Alignment:
Q  1 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  15017967 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagattttggaacatctaagtttctaaatcccaattcatc 15018066  T
Q  101 caatatgacttcttttgcaggcacctttggatatgctgctccaggtca 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15018067 caatatgacttcttttgcaggcacctttggatatgctgctccaggtca 15018114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 14521884 - 14521736
Alignment:
Q  1 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  14521884 ttcatcgagatatatccagcaagaatgttattttggatttggaatgtgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcatc 14521785  T
Q  101 caatatgacttcttttgcaggcacctttggatatgctgctccaggtcaa 149  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14521784 gaatatgacttcttttgcaggcacctttggatatgctgctccaggtcaa 14521736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 15037871 - 15038023
Alignment:
Q  1 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtc 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  15037871 ttcatcgagatatatccagcaagaatgttattttggatatggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaactcatc 15037970  T
Q  101 caatatgacttcttttgcaggcacctttggatatgctgctccaggtcaattcc 153  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15037971 caatatgtcttcttttgcaggcacctttggatatgctgctccaggtcaattcc 15038023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 15041439 - 15041593
Alignment:
Q  1 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  15041439 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttttaaatcccaattcatc 15041538  T
Q  101 caatatgacttcttttgcag--gcacctttggatatgctgctccaggtcaattcc 153  Q
    ||||||||||||||||||||  ||||||||||||||||||| |||||| ||||||    
T  15041539 caatatgacttcttttgcaggcgcacctttggatatgctgcaccaggtgaattcc 15041593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 14532005 - 14531853
Alignment:
Q  1 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| |||||||| || ||    
T  14532005 ttcatcgagatatatccagcaagaatgttattttggatttggaatacgtagctcatgtctcagacttcggaacatccaagtttctgaatcccaactcatc 14531906  T
Q  101 caatatgacttcttttgcaggcacctttggatatgctgctccaggtcaattcc 153  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14531905 caatatgacttcttttgcaggcacctttggatatgcagctccaggtcaattcc 14531853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 15033304 - 15033455
Alignment:
Q  1 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtc 100  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  15033304 ttcatcgcgatatatccagcaagaatgtcattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctcaatcccaattcatc 15033403  T
Q  101 caatatgacttcttttgcaggcacctttggatatgctgctccaggtcaattc 152  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||| |||||    
T  15033404 caatatgacttcttttgcaggcacttttggatatactgctccaggtgaattc 15033455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 14468655 - 14468803
Alignment:
Q  1 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtc 100  Q
    ||||||| ||||||||||| |||||| || ||||||||||||||||||| |||||||||||||| || |||||| |||||||||| ||||||||| | ||    
T  14468655 ttcatcgcgatatatccagtaagaatattgttttggatttggaatatgtggctcatgtctcagatttcggaacagctaagtttctcaatcccaatgcttc 14468754  T
Q  101 caatatgacttc---ttttgcaggcacctttggatatgctgctccaggt 146  Q
    ||||  ||| ||   ||||| |||||||||||||||  |||||||||||    
T  14468755 caattggacctctaattttgtaggcacctttggatacactgctccaggt 14468803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 14483603 - 14483751
Alignment:
Q  1 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtc 100  Q
    ||||||| ||||||||||| |||||| || ||||||||||||||||||| |||||||||||||| || |||||| |||||||||| |||||| ||   ||    
T  14483603 ttcatcgcgatatatccagtaagaatattgttttggatttggaatatgtggctcatgtctcagatttcggaacagctaagtttcttaatcccgataattc 14483702  T
Q  101 caatatgacttc---ttttgcaggcacctttggatatgctgctccaggt 146  Q
    ||||  ||| ||   ||||| |||||||||||||||  |||||||||||    
T  14483703 caattggacctctaattttgtaggcacctttggatacactgctccaggt 14483751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 14504834 - 14504987
Alignment:
Q  1 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtc 100  Q
    ||||||| |||||||| || |||||| || ||||||||||||||||||| ||||||||||| || || |||||| |||||||||| |||||| || | ||    
T  14504834 ttcatcgcgatatatcgagtaagaatattgttttggatttggaatatgtggctcatgtctcggatttcggaacagctaagtttcttaatcccgatgcttc 14504933  T
Q  101 caatatgacttct---tttgcaggcacctttggatatgctgctccaggtcaatt 151  Q
    ||||  ||| |||   |||| |||||| ||||||||  ||||||||||| ||||    
T  14504934 caattggacctctaactttgtaggcacgtttggatacactgctccaggttaatt 14504987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 14521676 - 14521631
Alignment:
Q  209 cttgtaaaatgtaactatttcacaattgtctggtctatatttcatg 254  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  14521676 cttgtaaaatgtaactatttcacaattgtctagtctatatttcatg 14521631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 13640 - 13792
Alignment:
Q  1 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||    
T  13640 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagacttcggaacatccaagttcctaaatcccaattcatc 13739  T
Q  101 caatatgacttcttttgcaggcacctttggatatgctgctccaggtcaattcc 153  Q
    ||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13740 caacatgacttcttttgcaggcacctttggatatgcagctccaggtcaattcc 13792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 7340 - 7490
Alignment:
Q  1 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtc 100  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||| | |||||||| |||||| |||| ||    
T  7340 ttcatcgtgatatatccagcaagaatgttgttttggatttggaatatgtggctcatgtctcagacttcggaacagccaagtttcttaatcccgattcttc 7439  T
Q  101 caatatgacttcttttgcaggcacctttggatatgctgctccaggtcaatt 151  Q
    ||||  ||| | ||||| ||| |||||||||||||||||||||||| ||||    
T  7440 caattggacctgttttgtaggaacctttggatatgctgctccaggttaatt 7490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 14283 - 14435
Alignment:
Q  1 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||    
T  14283 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagacttcggaacatccaagttcctaaatcccaattcatc 14382  T
Q  101 caatatgacttcttttgcaggcacctttggatatgctgctccaggtcaattcc 153  Q
    ||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14383 caacatgacttcttttgcaggcacctttggatatgcagctccaggtcaattcc 14435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 7984 - 8134
Alignment:
Q  1 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtc 100  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||| | |||||||| |||||| |||| ||    
T  7984 ttcatcgtgatatatccagcaagaatgttgttttggatttggaatatgtggctcatgtctcagacttcggaacagccaagtttcttaatcccgattcttc 8083  T
Q  101 caatatgacttcttttgcaggcacctttggatatgctgctccaggtcaatt 151  Q
    ||||  ||| | ||||| ||| |||||||||||||||||||||||| ||||    
T  8084 caattggacctgttttgtaggaacctttggatatgctgctccaggttaatt 8134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 17028692 - 17028837
Alignment:
Q  1 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtc 100  Q
    ||||||| ||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||| || |||||| |||||||||| |||| | |||| ||    
T  17028692 ttcatcgtgatatatccagtaagaatgttgttttggatttggaatatgttgctcatgtctcagatttcggaacagctaagtttcttaatctcgattcttc 17028791  T
Q  101 caatatgacttcttttgcaggcacctttggatatgctgctccaggt 146  Q
    ||||  |||  |||||| |||||||||||||||  |||||||||||    
T  17028792 caattggaccgcttttgtaggcacctttggatacactgctccaggt 17028837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 17559128 - 17559273
Alignment:
Q  1 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtc 100  Q
    ||||||| ||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||| || |||||| |||||||||| |||| | |||| ||    
T  17559128 ttcatcgtgatatatccagtaagaatgttgttttggatttggaatatgttgctcatgtctcagatttcggaacagctaagtttcttaatctcgattcttc 17559227  T
Q  101 caatatgacttcttttgcaggcacctttggatatgctgctccaggt 146  Q
    ||||  |||  |||||| |||||||||||||||  |||||||||||    
T  17559228 caattggaccgcttttgtaggcacctttggatacactgctccaggt 17559273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 15676337 - 15676187
Alignment:
Q  1 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtc 100  Q
    |||||||||||||||| ||||||||| |  |  ||||||| |||||||| |||| ||||||||||||||||| | ||||| |||||||||| |||||  |    
T  15676337 ttcatcgagatatatcaagcaagaatatcctactggatttagaatatgtggctcgtgtctcagactttggaatagctaagcttctaaatcctaattcaac 15676238  T
Q  101 caatatgacttcttttgcaggcacctttggatatgctgctccaggtcaatt 151  Q
    |||  |||| || |||||||| |||| ||||||||||||||||||| ||||    
T  15676237 caacttgacatcatttgcaggtacctatggatatgctgctccaggttaatt 15676187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 15664502 - 15664357
Alignment:
Q  1 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtc 100  Q
    |||||||||||||||| ||||||||| || || ||||||| |||||||| |||  ||||||||||||||||||  ||||| |||| ||||| |||||       
T  15664502 ttcatcgagatatatcaagcaagaatattcttctggatttagaatatgtggcttgtgtctcagactttggaacggctaagcttcttaatcctaattcaga 15664403  T
Q  101 caatatgacttcttttgcaggcacctttggatatgctgctccaggt 146  Q
    ||||  ||| || ||||||||||||| |||||||||| ||||||||    
T  15664402 caattggacctcatttgcaggcacctatggatatgcttctccaggt 15664357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 17849380 - 17849525
Alignment:
Q  1 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtc 100  Q
    |||||||||||||||| ||||||||| |  || | || ||||||||||||||||||||||| |||||||||| | ||||  ||||||||||  ||||  |    
T  17849380 ttcatcgagatatatcaagcaagaatatacttctagacttggaatatgtagctcatgtctctgactttggaatagctaaacttctaaatcctgattcaac 17849479  T
Q  101 caatatgacttcttttgcaggcacctttggatatgctgctccaggt 146  Q
    ||||  ||| || |||||||| ||| ||||||||||||||||||||    
T  17849480 caattggacctcatttgcaggaaccattggatatgctgctccaggt 17849525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 17825358 - 17825206
Alignment:
Q  1 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtc 100  Q
    |||||||||||||||| ||||||||| |  || |  ||||||||||||| ||||||||||| |||||||||| | ||||| |||| |||||  ||||  |    
T  17825358 ttcatcgagatatatcaagcaagaatatacttctaaatttggaatatgtggctcatgtctctgactttggaatagctaagcttcttaatcctgattcaac 17825259  T
Q  101 caatatgacttcttttgcaggcacctttggatatgctgctccaggtcaattcc 153  Q
    ||||  ||| || |||||||| ||| ||||||||||||| |||||| ||||||    
T  17825258 caattggacctcatttgcaggaaccattggatatgctgcaccaggtaaattcc 17825206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 16173409 - 16173559
Alignment:
Q  1 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtc 100  Q
    |||||||||||||||| ||||||||| || || ||||||  |||| ||| ||||||||||| |||||||||||| ||||| ||||  |||| ||||   |    
T  16173409 ttcatcgagatatatcaagcaagaatattcttctggattccgaatgtgtggctcatgtctctgactttggaacagctaagcttcttgatcctaatttaac 16173508  T
Q  101 caatatgacttcttttgcaggcacctttggatatgctgctccaggtcaatt 151  Q
          |||||| |||||| |||| ||||||||||||||||||||| ||||    
T  16173509 ttcctcgacttcatttgcatgcacatttggatatgctgctccaggttaatt 16173559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 14606756 - 14606840
Alignment:
Q  1 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttct 85  Q
    |||||||||||||||| ||||||||| || || |||||| ||||| ||| | ||||||||| |||||||||||| ||||| ||||    
T  14606756 ttcatcgagatatatcaagcaagaatattcttctggattcggaatgtgtgggtcatgtctctgactttggaacagctaagcttct 14606840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 16025933 - 16026017
Alignment:
Q  1 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttct 85  Q
    |||||||||||||||| ||||||||| || || |||||| ||||| ||| | ||||||||| |||||||||||| ||||| ||||    
T  16025933 ttcatcgagatatatcaagcaagaatattcttctggattcggaatgtgtgggtcatgtctctgactttggaacagctaagcttct 16026017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 16103747 - 16103825
Alignment:
Q  7 gagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttct 85  Q
    |||||||||| ||||||||| || || ||||||| |||||||| |||| |||||| |||||||||||| ||||| ||||    
T  16103747 gagatatatcaagcaagaatattcttctggatttagaatatgtggctcgtgtctcggactttggaacagctaagcttct 16103825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 31103483 - 31103567
Alignment:
Q  1 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttct 85  Q
    ||||||| |||||||| ||||||||| || || |  || | || |||| |||||||||||| |||||||| ||| ||||||||||    
T  31103483 ttcatcgtgatatatcgagcaagaatattcttctcaatcttgactatgaagctcatgtctccgactttgggacagctaagtttct 31103567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 13661 - 13519
Alignment:
Q  1 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtc 100  Q
    |||||||||||||||| ||||||||| || || ||||||| |||||||| |||| |||||| |||||||||||| ||||| ||||  || | |||||       
T  13661 ttcatcgagatatatcaagcaagaatattcttctggatttagaatatgtggctcgtgtctcggactttggaacagctaagcttcttgatgctaattcaga 13562  T
Q  101 caatatgacttcttttgcaggcacctttggatatgctgctcca 143  Q
    ||||  ||| || ||||||||||||| ||||||||||||||||    
T  13561 caattggacctcatttgcaggcacctatggatatgctgctcca 13519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 4828 - 4780
Alignment:
Q  1 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgt 49  Q
    |||||||||||||||| ||||||||| || || ||||||| ||||||||    
T  4828 ttcatcgagatatatcaagcaagaatattcttctggatttagaatatgt 4780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 37027619 - 37027708
Alignment:
Q  1 ttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatc 90  Q
    ||||||| || ||||| ||||| |||||| |||| |||||||| | || |||| |  ||||||||||||||||| ||||| |||| ||||    
T  37027619 ttcatcgcgacatatcgagcaaaaatgttcttttagatttggattgtgaagcttacatctcagactttggaacagctaagattctgaatc 37027708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University