View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18378_high_1 (Length: 731)

Name: NF18378_high_1
Description: NF18378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18378_high_1
NF18378_high_1
[»] chr6 (8 HSPs)
chr6 (36-719)||(28138008-28138692)
chr6 (67-245)||(12938681-12938860)
chr6 (67-230)||(33694835-33694998)
chr6 (427-498)||(6982835-6982906)
chr6 (433-496)||(10501975-10502038)
chr6 (203-246)||(12466438-12466481)
chr6 (116-190)||(14532057-14532131)
chr6 (269-349)||(30587503-30587579)
[»] chr4 (14 HSPs)
chr4 (14-246)||(42976369-42976602)
chr4 (67-245)||(27292985-27293164)
chr4 (67-239)||(4919059-4919232)
chr4 (563-719)||(2048761-2048920)
chr4 (55-144)||(20133410-20133499)
chr4 (46-144)||(55919365-55919463)
chr4 (46-144)||(28679508-28679606)
chr4 (64-137)||(45989606-45989679)
chr4 (423-497)||(39735815-39735889)
chr4 (432-517)||(2048966-2049051)
chr4 (429-498)||(3958945-3959014)
chr4 (64-137)||(42069042-42069115)
chr4 (64-137)||(47031455-47031528)
chr4 (91-144)||(15531234-15531287)
[»] chr3 (12 HSPs)
chr3 (36-246)||(31658787-31658998)
chr3 (67-245)||(50650391-50650570)
chr3 (46-230)||(12938455-12938640)
chr3 (43-144)||(5232946-5233047)
chr3 (43-144)||(20104322-20104423)
chr3 (55-144)||(39833218-39833307)
chr3 (116-230)||(29833329-29833444)
chr3 (250-364)||(4292984-4293095)
chr3 (70-245)||(33216657-33216833)
chr3 (73-144)||(36950163-36950234)
chr3 (91-144)||(29703559-29703612)
chr3 (91-144)||(53282294-53282347)
[»] chr5 (11 HSPs)
chr5 (67-245)||(30624903-30625082)
chr5 (67-230)||(41413442-41413606)
chr5 (46-230)||(1828466-1828651)
chr5 (46-230)||(40313931-40314116)
chr5 (70-245)||(31482071-31482247)
chr5 (427-514)||(33417416-33417503)
chr5 (46-144)||(24788302-24788400)
chr5 (564-669)||(33417260-33417366)
chr5 (91-144)||(39884696-39884749)
chr5 (423-492)||(31610042-31610111)
chr5 (478-517)||(15867381-15867420)
[»] chr1 (10 HSPs)
chr1 (67-245)||(27286203-27286382)
chr1 (67-245)||(52385813-52385992)
chr1 (47-229)||(39241614-39241793)
chr1 (46-144)||(12981521-12981619)
chr1 (46-144)||(45348246-45348344)
chr1 (423-496)||(42080685-42080758)
chr1 (68-137)||(45325635-45325704)
chr1 (559-645)||(17937621-17937709)
chr1 (597-645)||(17867361-17867409)
chr1 (429-476)||(43403894-43403941)
[»] chr2 (18 HSPs)
chr2 (67-245)||(14096295-14096474)
chr2 (36-157)||(18977078-18977200)
chr2 (558-669)||(18559840-18559952)
chr2 (43-144)||(37078947-37079048)
chr2 (46-144)||(15330735-15330833)
chr2 (46-144)||(37261675-37261773)
chr2 (46-144)||(14810093-14810191)
chr2 (46-144)||(16429864-16429962)
chr2 (46-144)||(17690604-17690702)
chr2 (427-492)||(21949895-21949960)
chr2 (73-144)||(33755075-33755146)
chr2 (597-639)||(21950067-21950109)
chr2 (91-144)||(7089225-7089278)
chr2 (423-476)||(41411516-41411569)
chr2 (195-245)||(18977214-18977264)
chr2 (429-476)||(40275158-40275205)
chr2 (423-492)||(9446973-9447042)
chr2 (425-498)||(14555887-14555960)
[»] chr7 (14 HSPs)
chr7 (67-245)||(19436711-19436890)
chr7 (71-245)||(29833948-29834123)
chr7 (43-144)||(47327942-47328043)
chr7 (110-231)||(29258440-29258562)
chr7 (46-144)||(45972423-45972521)
chr7 (563-719)||(38835917-38836075)
chr7 (427-517)||(8308208-8308298)
chr7 (60-144)||(29243380-29243462)
chr7 (64-137)||(6442633-6442706)
chr7 (432-517)||(38836121-38836206)
chr7 (64-133)||(34094118-34094187)
chr7 (427-498)||(49094543-49094614)
chr7 (426-498)||(30559359-30559431)
chr7 (433-496)||(25862613-25862676)
[»] chr8 (10 HSPs)
chr8 (70-230)||(13802682-13802843)
chr8 (558-668)||(40715776-40715887)
chr8 (46-144)||(531684-531782)
chr8 (427-517)||(6596498-6596588)
chr8 (60-144)||(30945445-30945527)
chr8 (64-194)||(23613574-23613705)
chr8 (73-144)||(3879472-3879543)
chr8 (563-636)||(6596378-6596452)
chr8 (429-498)||(19168178-19168247)
chr8 (432-517)||(40715928-40716013)
[»] scaffold0166 (1 HSPs)
scaffold0166 (46-144)||(30685-30783)
[»] scaffold0098 (1 HSPs)
scaffold0098 (597-645)||(21800-21848)
[»] scaffold0141 (1 HSPs)
scaffold0141 (429-495)||(16533-16599)
[»] scaffold0060 (1 HSPs)
scaffold0060 (429-498)||(18923-18991)


Alignment Details
Target: chr6 (Bit Score: 600; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 36 - 719
Target Start/End: Original strand, 28138008 - 28138692
Alignment:
Q  36 gggaaataaaaggagagcgaattggtactagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatca 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28138008 gggaaataaaaggagagcgaattggtactagaagaaaaatcatgtgtagatgacgtaccacaataatatagagaccaagtaaatctaacctttaagatca 28138107  T
Q  136 tgaaataaacttgtccatggtgggacatatggagcaagtggtccatattaaaatttgtcctacatctgacgtgtcatgacttgaaatttgattggctgaa 235  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138108 tgaaataaacttgtccatgatgggacatatggagcaagtggtccatattaaaatttgtcctacatctgacgtgtcatgacttgaaatttgattggctgaa 28138207  T
Q  236 ttaaacgactgtac-ttttttgataaaggctaagaaatgcattaaaatcggcaggagtgggtctgcaccctattacagtattaatgagagaatctaaaaa 334  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138208 ttaaacgactgtaccttttttgataaaggctaagaaatgcattaaaatcggcaggagtgggtctgcaccctattacagtattaatgagagaatctaaaaa 28138307  T
Q  335 tggagaccaaaatgtctctgataaaagaaagggcgagaagcatagctttgctagtaaaccaaagaaaggaaactgtcaaacaacaaatacagtcacaaat 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138308 tggagaccaaaatgtctctgataaaagaaagggcgagaagcatagctttgctagtaaaccaaagaaaggaaactgtcaaacaacaaatacagtcacaaat 28138407  T
Q  435 atttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgctcttcggtgaaacttgtctannnnnnnnnnnnnnnnn 534  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     
T  28138408 atttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgctcttcggtgaaacttgtctatttttctgctttttttc 28138507  T
Q  535 nnnnnngttcttggttgttgccagacagacaaggctagaatcatgctctccattagtataatcccccaaaacttttgtaaaatgtccacacttctctgag 634  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138508 ctttttgttcttggttgttgccagacagacaaggctagaatcatgctctccattagtataatcccccaaaacttttgtaaaatgtccacacttctctgag 28138607  T
Q  635 cttcagaagaacaaacatttgcagcatgcactggttccaaaaccggaagtttgtctgatgttagagaggtgtggtaagttgtgat 719  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138608 cttcagaagaacaaacatttgcagcatgcactggttccaaaaccggaagtttgtctgatgttagagaggtgtggtaagttgtgat 28138692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 67 - 245
Target Start/End: Complemental strand, 12938860 - 12938681
Alignment:
Q  67 aagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaacttgtccatggtgggacatatg 166  Q
    ||||||||||||||||||| |  |||||||||||| ||| |||||||  |||||||||| |||||||  ||||||||||||||| ||||||| |||||||    
T  12938860 aagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagattttgaaataaacttgtctatggtggaacatatg 12938761  T
Q  167 gagcaagtggtccatattaaaatttgt-cctacatctgacgtgtcatgacttgaaatttgattggctgaattaaacgact 245  Q
     |||||||| ||||||||||||||||| || ||||||||||||||||  ||| |||| ||||||| ||||||||||||||    
T  12938760 aagcaagtgatccatattaaaatttgtcccaacatctgacgtgtcatcgcttaaaatctgattggttgaattaaacgact 12938681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 67 - 230
Target Start/End: Complemental strand, 33694998 - 33694835
Alignment:
Q  67 aagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaacttgtccatggtgggacatatg 166  Q
    |||||||||||| |||||| |  |||||||||||||||| || |||| ||||||||||  |||||||||||||||||| ||||| ||| ||| |||||||    
T  33694998 aagaaaaatcatatgtagagggtgtaccacaataatatagaggccaaataaatctaactgttaagatcatgaaataaatttgtctatgatggaacatatg 33694899  T
Q  167 gagcaagtggtccatattaaaatttgtcctacatctgacgtgtcatgacttgaaatttgattgg 230  Q
    ||||||||| ||||||||||||||| |||   |||| ||||||||| |||| |||| |||||||    
T  33694898 gagcaagtgatccatattaaaatttttccattatctaacgtgtcatcacttaaaatctgattgg 33694835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 427 - 498
Target Start/End: Complemental strand, 6982906 - 6982835
Alignment:
Q  427 tcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgct 498  Q
    ||||||||||||| |||| ||||||| |||||||||||| |||||||||| |||||||| ||||||| ||||    
T  6982906 tcacaaatatttaagattgcttttgattacacccttttttgaacgagtttgtatgtgctcactacttatgct 6982835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 433 - 496
Target Start/End: Original strand, 10501975 - 10502038
Alignment:
Q  433 atatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtg 496  Q
    |||||| ||||| ||||| | |||||||||||| ||||||||||  ||||||||||||||||||    
T  10501975 atatttgggattgctttttattacaccctttttggaacgagtttggatgtgcttactacttgtg 10502038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 12466481 - 12466438
Alignment:
Q  203 gacgtgtcatgacttgaaatttgattggctgaattaaacgactg 246  Q
    ||||||| |||||||||||||||||||| |||||||||||||||    
T  12466481 gacgtgttatgacttgaaatttgattggttgaattaaacgactg 12466438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 14532057 - 14532131
Alignment:
Q  116 aaatctaacctttaagatcatgaaataaacttgtccatggtgggacatatggagcaagtggtccatattaaaatt 190  Q
    |||||||||| |||||||| |||| ||||| |||||||||||  |||||| |||||||| || ||||||| ||||    
T  14532057 aaatctaaccattaagatcgtgaagtaaacctgtccatggtgaaacatatagagcaagttgttcatattagaatt 14532131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 269 - 349
Target Start/End: Complemental strand, 30587579 - 30587503
Alignment:
Q  269 aaatgcattaaaa-tcggcaggagtgggtctgcaccctattacagtattaatgagagaatctaaaaatggagaccaaaatgt 349  Q
    ||||||||||||| | | |||||||||| |||||||||||||||     |||||||||||||||||| | ||||||||||||    
T  30587579 aaatgcattaaaaatagtcaggagtgggcctgcaccctattaca-----aatgagagaatctaaaaaagtagaccaaaatgt 30587503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 5e-64; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 14 - 246
Target Start/End: Complemental strand, 42976602 - 42976369
Alignment:
Q  14 agaatatggataaatnnnnnnngggaaataaa-aggagagcgaattggtactagaagaaaaatcatgtgtagatgacgtaccacaataatatatagacca 112  Q
    |||||||||||||||       |||||||||| ||||||| |||||| |||||||||||||||||||||||||||  |||||||| ||| ||| ||||||    
T  42976602 agaatatggataaataaagaaagggaaataaagaggagagagaattgatactagaagaaaaatcatgtgtagatggtgtaccacattaacatagagacca 42976503  T
Q  113 agtaaatctaacctttaagatcatgaaataaacttgtccatggtgggacatatggagcaagtggtccatattaaaatttgtcctacatctgacgtgtcat 212  Q
    ||||||||||||| |||||||||| ||| ||||||||| |||||||||| ||||||||||||| ||||||||||||||| | |||||| |||||||||||    
T  42976502 agtaaatctaaccgttaagatcataaaagaaacttgtctatggtgggacttatggagcaagtgatccatattaaaatttattctacatgtgacgtgtcat 42976403  T
Q  213 gacttgaaatttgattggctgaattaaacgactg 246  Q
      |||||||| ||||||| |||||||||||||||    
T  42976402 ctcttgaaatctgattggttgaattaaacgactg 42976369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 67 - 245
Target Start/End: Complemental strand, 27293164 - 27292985
Alignment:
Q  67 aagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaacttgtccatggtgggacatatg 166  Q
    ||||||||||||||||||| |  |||||||||||| ||| |||||||  |||||||||| |||||||| ||||||||||||||| ||||||| |||||||    
T  27293164 aagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatg 27293065  T
Q  167 gagcaagtggtccatattaaaatttgt-cctacatctgacgtgtcatgacttgaaatttgattggctgaattaaacgact 245  Q
     | |||||| ||||||||| ||||||| || |||| |||||||||||| |||||||| ||||||||||||||||||||||    
T  27293064 aaacaagtgatccatattagaatttgtcccaacatatgacgtgtcatggcttgaaatctgattggctgaattaaacgact 27292985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 67 - 239
Target Start/End: Complemental strand, 4919232 - 4919059
Alignment:
Q  67 aagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaacttgtccatggtgggacatatg 166  Q
    |||||||||||||||||||    |||||||||||  ||| |||||||  |||||||||| |||||||| ||||||||||||||| ||||||| |||||||    
T  4919232 aagaaaaatcatgtgtagagcgtgtaccacaatatcatagagaccaaacaaatctaaccattaagatcttgaaataaacttgtctatggtggaacatatg 4919133  T
Q  167 gagcaagtggtccatattaaaatttgt-cctacatctgacgtgtcatgacttgaaatttgattggctgaattaa 239  Q
     | |||||| ||||||||| ||||||| || ||||||||||||||||| |||||||| ||||||||||||||||    
T  4919132 aaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatggcttgaaatctgattggctgaattaa 4919059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 563 - 719
Target Start/End: Complemental strand, 2048920 - 2048761
Alignment:
Q  563 acaaggctagaatcatgctctccattagtataatccccc-aaaacttttgtaaaatgtccacacttctctgagcttcagaagaacaaacatttgcagcat 661  Q
    ||||||||||| ||||||||  |||| |||||||||||| |||||||||||||| |||| ||||||||||||||| ||||||||||||||  ||||| ||    
T  2048920 acaaggctagactcatgctcctcattggtataatccccccaaaacttttgtaaa-tgtctacacttctctgagctgcagaagaacaaacaactgcagtat 2048822  T
Q  662 gcactggttc---caaaaccggaagtttgtctgatgttagagaggtgtggtaagttgtgat 719  Q
    ||||||| ||   |||||| ||||| ||||||| || ||||||||||| |||||| |||||    
T  2048821 gcactggatccttcaaaacaggaagcttgtctgctgatagagaggtgtagtaagtagtgat 2048761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 55 - 144
Target Start/End: Complemental strand, 20133499 - 20133410
Alignment:
Q  55 aattggtactagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaa 144  Q
    |||||||||||||||||||||||||||||||||  |||||||||||| ||| ||| ||||||||||||||| |||| |||||||||||||    
T  20133499 aattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 20133410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 55919365 - 55919463
Alignment:
Q  46 aggagagcgaattggtactagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaa 144  Q
    |||||||  |||||||||||||||||||||||||||||||||  |||||||||||| ||| ||| ||||||||||||||  |||| |||||||||||||    
T  55919365 aggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaactattaaaatcatgaaataaa 55919463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 28679606 - 28679508
Alignment:
Q  46 aggagagcgaattggtactagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaa 144  Q
    |||||||  |||||||||||||||||||||||||||||||||   ||||||||||| ||| ||| ||||||||| ||||  |||||||||| |||||||    
T  28679606 aggagagaaaattggtactagaagaaaaatcatgtgtagatggtataccacaataacatagagatcaagtaaatttaactattaagatcataaaataaa 28679508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 45989606 - 45989679
Alignment:
Q  64 tagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatg 137  Q
    ||||||||||||||||||||||||   ||||||||||| ||| ||||||| ||||||||||| |||||||||||    
T  45989606 tagaagaaaaatcatgtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatg 45989679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 423 - 497
Target Start/End: Complemental strand, 39735889 - 39735815
Alignment:
Q  423 acagtcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgc 497  Q
    ||||||||| |||||| ||||| ||||||| ||||||||| || |||||||||| |||||||| |||||||||||    
T  39735889 acagtcacatatattttggattgcttttgattacacccttcttggaacgagtttgtatgtgctcactacttgtgc 39735815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 432 - 517
Target Start/End: Complemental strand, 2049051 - 2048966
Alignment:
Q  432 aatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgctcttcggtgaaacttgtcta 517  Q
    ||||||| ||||| |||||||  ||||||||||| |||||||||| ||| |||| |||||||||||| || | |||||||||||||    
T  2049051 aatatttgggattgcttttgataacaccctttttggaacgagtttgtatatgctcactacttgtgctttttgatgaaacttgtcta 2048966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 429 - 498
Target Start/End: Original strand, 3958945 - 3959014
Alignment:
Q  429 acaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgct 498  Q
    |||||||||| ||||| |||||||  |||||||||||||||||||||| |||||||| |||| |||||||    
T  3958945 acaaatatttgggattgcttttgatgacaccctttttagaacgagtttgtatgtgctcactatttgtgct 3959014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 42069042 - 42069115
Alignment:
Q  64 tagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatg 137  Q
    ||||||||||||||||||||||||   ||||||||||| ||| ||| ||| ||||||||||| |||||||||||    
T  42069042 tagaagaaaaatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccgttaagatcatg 42069115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 47031455 - 47031528
Alignment:
Q  64 tagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatg 137  Q
    ||||||||||||||||||||||||   ||||||||||| ||| ||| ||| ||||||||||| |||||||||||    
T  47031455 tagaagaaaaatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccattaagatcatg 47031528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 15531234 - 15531287
Alignment:
Q  91 taccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaa 144  Q
    ||||||||||| ||| |||| |||||||||||||| ||||||||||||||||||    
T  15531234 taccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 15531287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 5e-61; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 36 - 246
Target Start/End: Original strand, 31658787 - 31658998
Alignment:
Q  36 gggaaataaa-aggagagcgaattggtactagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatc 134  Q
    |||||||||| ||||||| |||||| || ||||||||||||||||||||||||  |||||||||||| ||| ||||||||||||||||||| ||||||||    
T  31658787 gggaaataaagaggagagagaattgatattagaagaaaaatcatgtgtagatggtgtaccacaataacatagagaccaagtaaatctaaccgttaagatc 31658886  T
Q  135 atgaaataaacttgtccatggtgggacatatggagcaagtggtccatattaaaatttgtcctacatctgacgtgtcatgacttgaaatttgattggctga 234  Q
    || ||| ||||||||| |||||||||| ||||||||||||| ||||||||| ||||| |||||||| ||| |||||||  |||||||| ||||||| |||    
T  31658887 ataaaagaaacttgtctatggtgggacttatggagcaagtgatccatattagaatttatcctacatgtgatgtgtcatctcttgaaatctgattggttga 31658986  T
Q  235 attaaacgactg 246  Q
    ||||||||||||    
T  31658987 attaaacgactg 31658998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 67 - 245
Target Start/End: Original strand, 50650391 - 50650570
Alignment:
Q  67 aagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaacttgtccatggtgggacatatg 166  Q
    ||||||||||||||||||| |  |||||||||||| ||| |||||||  |||||||||| |||||||| ||||||||||||||| ||||||| |||||||    
T  50650391 aagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatg 50650490  T
Q  167 gagcaagtggtccatattaaaatttgt-cctacatctgacgtgtcatgacttgaaatttgattggctgaattaaacgact 245  Q
     | |||||| ||||||||| ||||||| || ||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  50650491 aaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatggcttgaaatctgattggctgaattaaacgact 50650570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 46 - 230
Target Start/End: Complemental strand, 12938640 - 12938455
Alignment:
Q  46 aggagagcgaattggtactagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaac 145  Q
    ||||||| || |||| | || ||||||||||||||||| | |  |||||||||||| ||| | |||||||||| |||||| |||||||| ||||||||||    
T  12938640 aggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaataaac 12938541  T
Q  146 ttgtccatggtgggacatatggagcaagtggtccatattaaaatttgtcct-acatctgacgtgtcatgacttgaaatttgattgg 230  Q
    ||||||| ||||| ||||||| |||||||| ||||||||| |||||||||| ||||||||||||||||| |||||||| |||||||    
T  12938540 ttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcctaacatctgacgtgtcatggcttgaaatctgattgg 12938455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 5233047 - 5232946
Alignment:
Q  43 aaaaggagagcgaattggtactagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaata 142  Q
    |||||||||| |||||||||||||||||||| |||||||||||||  |||||||||||| ||| ||| ||||||||||||||  ||||||||||||||||    
T  5233047 aaaaggagagagaattggtactagaagaaaattcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaaata 5232948  T
Q  143 aa 144  Q
    ||    
T  5232947 aa 5232946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 20104423 - 20104322
Alignment:
Q  43 aaaaggagagcgaattggtactagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaata 142  Q
    |||||||||| |||||||||||||||||||| | |||||||||||  |||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||    
T  20104423 aaaaggagagagaattggtactagaagaaaattaatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaaccattaagatcatgaaata 20104324  T
Q  143 aa 144  Q
    ||    
T  20104323 aa 20104322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 55 - 144
Target Start/End: Original strand, 39833218 - 39833307
Alignment:
Q  55 aattggtactagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaa 144  Q
    |||||||||||||||||||||||||||||||||  |||||||||||| ||| ||| ||||||||||||||| |||| |||||||||||||    
T  39833218 aattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 39833307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 116 - 230
Target Start/End: Complemental strand, 29833444 - 29833329
Alignment:
Q  116 aaatctaacctttaagatcatgaaataaacttgtccatggtgggacatatggagcaagtggtccatattaaaatttgtcc-tacatctgacgtgtcatga 214  Q
    |||||||||| |||||||||| || ||||  |||| ||||||| |||||||||||||||| ||||||||| ||||||||| ||| ||||||||||||| |    
T  29833444 aaatctaaccattaagatcatcaagtaaatctgtctatggtggaacatatggagcaagtgatccatattataatttgtccttacttctgacgtgtcatca 29833345  T
Q  215 cttgaaatttgattgg 230  Q
    ||| |||| |||||||    
T  29833344 cttaaaatctgattgg 29833329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 250 - 364
Target Start/End: Complemental strand, 4293095 - 4292984
Alignment:
Q  250 ttttttgataaaggctaagaaatgcattaaaatc--ggcaggagtgggtctgcaccctattacagtattaatgagagaatctaaaaatggagaccaaaat 347  Q
    |||||| ||||||||||| |||||||||||||    |||||||||||| |||||||||||||||     ||||||||| |||||||||||||||||||||    
T  4293095 tttttttataaaggctaaaaaatgcattaaaaaaaaggcaggagtgggcctgcaccctattaca-----aatgagagagtctaaaaatggagaccaaaat 4293001  T
Q  348 gtctctgataaaagaaa 364  Q
    |||| |||| |||||||    
T  4293000 gtctttgattaaagaaa 4292984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 70 - 245
Target Start/End: Original strand, 33216657 - 33216833
Alignment:
Q  70 aaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaacttgtccatggtgggacatatggag 169  Q
    |||||| ||| |||||||  |||||| ||||  ||| || ||||  |||||||||| ||||||||||||| ||||  |||| ||||||| ||||||||||    
T  33216657 aaaaattatgcgtagatgctgtaccataataccatagaggccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 33216756  T
Q  170 caagtggtccatattaaaatttgtc-ctacatctgacgtgtcatgacttgaaatttgattggctgaattaaacgact 245  Q
    |||||| ||||||||| ||||||||  ||| |  |||||||||| |||| |||| ||||||||| | | ||||||||    
T  33216757 caagtgatccatattataatttgtcattacttaggacgtgtcatcacttaaaatctgattggctcattcaaacgact 33216833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 36950163 - 36950234
Alignment:
Q  73 aatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaa 144  Q
    |||||||||||||  |  ||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||    
T  36950163 aatcatgtgtagacaatataccacaataacatagagaccaagtaaatctaaccattaagatcatgaaataaa 36950234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 29703559 - 29703612
Alignment:
Q  91 taccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaa 144  Q
    ||||||||||| ||| |||| |||||||||||||| ||||||||||||||||||    
T  29703559 taccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 29703612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 53282347 - 53282294
Alignment:
Q  91 taccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaa 144  Q
    ||||||||||| ||| |||| |||||||||||||| ||||||| ||||||||||    
T  53282347 taccacaataacatagagactaagtaaatctaaccattaagataatgaaataaa 53282294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 1e-46; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 67 - 245
Target Start/End: Complemental strand, 30625082 - 30624903
Alignment:
Q  67 aagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaacttgtccatggtgggacatatg 166  Q
    ||||||||||||||||||| |  |||||||||||| ||| |||||||  |||||||||| |||| ||  ||||||||||||||| ||||||| |||||||    
T  30625082 aagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaaaattttgaaataaacttgtctatggtggaacatatg 30624983  T
Q  167 gagcaagtggtccatattaaaatttgt-cctacatctgacgtgtcatgacttgaaatttgattggctgaattaaacgact 245  Q
     |||||||| ||||||||||||||| | || |||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  30624982 aagcaagtgatccatattaaaatttatcccaacatctgacgtgtcatgacttgaaatctgattggttgaattaaacgact 30624903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 67 - 230
Target Start/End: Original strand, 41413442 - 41413606
Alignment:
Q  67 aagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaacttgtccatggtgggacatatg 166  Q
    ||||||||||||||||| | |  |||||||||||| ||| | |||||||||| |||||| |||||||| ||||||||||||||||| ||||| |||||||    
T  41413442 aagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaataaacttgtccacggtggaacatatg 41413541  T
Q  167 gagcaagtggtccatattaaaatttgtcct-acatctgacgtgtcatgacttgaaatttgattgg 230  Q
     |||||||| ||||||||| |||||||||| ||||||||||||||||| |||||||| |||||||    
T  41413542 aagcaagtgatccatattataatttgtcctaacatctgacgtgtcatggcttgaaatctgattgg 41413606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 46 - 230
Target Start/End: Complemental strand, 1828651 - 1828466
Alignment:
Q  46 aggagagcgaattggtactagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaac 145  Q
    ||||||| || |||| | || ||||||||||||||||| | |  |||||||||||| ||| | |||||||||| |||||| |||||||| ||||||||||    
T  1828651 aggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaataaac 1828552  T
Q  146 ttgtccatggtgggacatatggagcaagtggtccatattaaaatttgtcct-acatctgacgtgtcatgacttgaaatttgattgg 230  Q
    ||||||| ||||| ||||||| |||||||| ||||||||| |||||||| | ||||||||||||||||| |||||||| |||||||    
T  1828551 ttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcataacatctgacgtgtcatggcttgaaatctgattgg 1828466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 46 - 230
Target Start/End: Complemental strand, 40314116 - 40313931
Alignment:
Q  46 aggagagcgaattggtactagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaac 145  Q
    ||||||| || |||| | || ||||||||||||||||| | |  |||||||||||| ||| | |||||||||| |||||| |||||||| ||||||||||    
T  40314116 aggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaataaac 40314017  T
Q  146 ttgtccatggtgggacatatggagcaagtggtccatattaaaatttgtcct-acatctgacgtgtcatgacttgaaatttgattgg 230  Q
    ||||||| ||||| ||||||| |||||||| ||||||||  |||||||||| ||||||||||||||||| |||||||| |||||||    
T  40314016 ttgtccacggtggaacatatgaagcaagtgatccatattgtaatttgtcctaacatctgacgtgtcatggcttgaaatctgattgg 40313931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 70 - 245
Target Start/End: Original strand, 31482071 - 31482247
Alignment:
Q  70 aaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaacttgtccatggtgggacatatggag 169  Q
    |||||| |||||||||||  |||||| ||||  ||| |||||||  |||||||||| ||||||||||||| ||||  |||| ||||||| ||||||||||    
T  31482071 aaaaattatgtgtagatggtgtaccataataccatagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 31482170  T
Q  170 caagtggtccatattaaaatttgtcc-tacatctgacgtgtcatgacttgaaatttgattggctgaattaaacgact 245  Q
    |||||| ||||||||| ||||||||| ||| ||||| ||||||| |||| |||||||||||||| | | ||||||||    
T  31482171 caagtgatccatattataatttgtccttacttctgaagtgtcatcacttaaaatttgattggctcattcaaacgact 31482247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 427 - 514
Target Start/End: Complemental strand, 33417503 - 33417416
Alignment:
Q  427 tcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgctcttcggtgaaacttgt 514  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||| |||||||||||| || ||||||||||||    
T  33417503 tcacaaatatttaggattacttttgattacaccctttttagaacgaatttgtatgtgctcactacttgtgctttttggtgaaacttgt 33417416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 24788302 - 24788400
Alignment:
Q  46 aggagagcgaattggtactagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaa 144  Q
    |||||||  |||||||||||||||||||||||||||||||||  |||||||||||| ||| ||| ||||||||||||||| |||| ||||| |||||||    
T  24788302 aggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcataaaataaa 24788400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 564 - 669
Target Start/End: Complemental strand, 33417366 - 33417260
Alignment:
Q  564 caaggctagaatcatgctctccattagtataatcccc-caaaacttttgtaaaatgtccacacttctctgagcttcagaagaacaaacatttgcagcatg 662  Q
    |||||||||| ||||||||  || ||||||||||||| ||||||| |||||||||||| |||| ||||||| || |||||||||| |||  | || ||||    
T  33417366 caaggctagactcatgctcctcaatagtataatcccctcaaaactgttgtaaaatgtcgacacatctctgatctgcagaagaacagacaactccatcatg 33417267  T
Q  663 cactggt 669  Q
    |||||||    
T  33417266 cactggt 33417260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 39884749 - 39884696
Alignment:
Q  91 taccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaa 144  Q
    ||||||||||| ||| |||| |||||||||||||| ||||||||||||||||||    
T  39884749 taccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 39884696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 423 - 492
Target Start/End: Complemental strand, 31610111 - 31610042
Alignment:
Q  423 acagtcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactact 492  Q
    |||||| || |||||| ||||| |||||||  ||||||||||||||||| |||| |||||||| ||||||    
T  31610111 acagtcgcatatatttgggattgcttttgatcacaccctttttagaacgcgtttgtatgtgctcactact 31610042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 478 - 517
Target Start/End: Original strand, 15867381 - 15867420
Alignment:
Q  478 tatgtgcttactacttgtgctcttcggtgaaacttgtcta 517  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  15867381 tatgtgcttactacttgtgctttttggtgaaacttgtcta 15867420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 1e-46; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 67 - 245
Target Start/End: Complemental strand, 27286382 - 27286203
Alignment:
Q  67 aagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaacttgtccatggtgggacatatg 166  Q
    ||||||||||||||||||| |  |||||||||||| ||| |||||||  |||||||||| |||||||  ||||||||||||||| ||||||| |||||||    
T  27286382 aagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagattttgaaataaacttgtctatggtggaacatatg 27286283  T
Q  167 gagcaagtggtccatatt-aaaatttgtcctacatctgacgtgtcatgacttgaaatttgattggctgaattaaacgact 245  Q
     |||||||| |||||||| |||||||  || ||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  27286282 aagcaagtgatccatattaaaaattttcccaacatctgacgtgtcatggcttgaaatctgattggctgaattaaacgact 27286203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 67 - 245
Target Start/End: Original strand, 52385813 - 52385992
Alignment:
Q  67 aagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaacttgtccatggtgggacatatg 166  Q
    ||||||||||||||||||| |  |||||||||||| ||| ||| |||  |||||||||| | |||||| ||||||||||||||| ||||||| |||||||    
T  52385813 aagaaaaatcatgtgtagagggtgtaccacaataacatagagatcaaacaaatctaaccgtaaagatcttgaaataaacttgtctatggtggaacatatg 52385912  T
Q  167 gagcaagtggtccatattaaaatttgt-cctacatctgacgtgtcatgacttgaaatttgattggctgaattaaacgact 245  Q
     | || ||| ||||| ||| ||||||| || |||| ||| |||||||| |||||||| ||||||||||||||||||||||    
T  52385913 aaacacgtgatccattttagaatttgtcccaacatatgatgtgtcatggcttgaaatctgattggctgaattaaacgact 52385992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 47 - 229
Target Start/End: Complemental strand, 39241793 - 39241614
Alignment:
Q  47 ggagagcgaattggtactagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaact 146  Q
    |||||| ||||||  | ||||||||||||||||||||||||  |||||||||||| | | |   || |||||||||||| ||||||||||||||||||||    
T  39241793 ggagagagaattgtaattagaagaaaaatcatgtgtagatggtgtaccacaataacaaaga---caggtaaatctaaccgttaagatcatgaaataaact 39241697  T
Q  147 tgtccatggtgggacatatggagcaagtggtccatattaaaatttgtc-ctacatctgacgtgtcatgacttgaaatttgattg 229  Q
    |||| ||||||| ||||||| |||||||| | ||||||| |||||||| | ||||||||||||| || |||| |||| ||||||    
T  39241696 tgtctatggtggaacatatgaagcaagtgat-catattagaatttgtctcaacatctgacgtgttatcacttaaaatctgattg 39241614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 12981619 - 12981521
Alignment:
Q  46 aggagagcgaattggtactagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaa 144  Q
    |||||||  |||||||||||||||||||||||||||||||||  |||||||||||| ||| ||| ||||||||||||||| |||| |||||||||||||    
T  12981619 aggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 12981521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 45348246 - 45348344
Alignment:
Q  46 aggagagcgaattggtactagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaa 144  Q
    |||||||  |||||||||||||||||||||||||||||||||  |||||||||||| ||| ||| ||||||||||||||| |||| |||||||||||||    
T  45348246 aggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 45348344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 423 - 496
Target Start/End: Original strand, 42080685 - 42080758
Alignment:
Q  423 acagtcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtg 496  Q
    ||||||| | |||||| ||||| ||||||| |||||||||||| ||||||||||  ||||||| ||||||||||    
T  42080685 acagtcaaacatatttgggattgcttttgattacaccctttttggaacgagtttggatgtgctcactacttgtg 42080758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 45325635 - 45325704
Alignment:
Q  68 agaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatg 137  Q
    ||||||||||||||||||||   ||||||||||| ||| |||| || ||||||||||| |||||||||||    
T  45325635 agaaaaatcatgtgtagatggtataccacaataacatagagactaattaaatctaaccgttaagatcatg 45325704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 559 - 645
Target Start/End: Complemental strand, 17937709 - 17937621
Alignment:
Q  559 acagacaaggctagaatcatgctctccattagtataatc-ccccaaaactttt-gtaaaatgtccacacttctctgagcttcagaagaa 645  Q
    |||||||||| |||| ||||| ||  || |||| ||||| ||||||||||||| |||||||||| ||||||||||||||| ||||||||    
T  17937709 acagacaaggttagattcatgttcctcagtagtgtaatcaccccaaaactttttgtaaaatgtcaacacttctctgagctgcagaagaa 17937621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 597 - 645
Target Start/End: Original strand, 17867361 - 17867409
Alignment:
Q  597 cccccaaaacttttgtaaaatgtccacacttctctgagcttcagaagaa 645  Q
    ||||||||| ||||||||||||||||||||||||| ||||  |||||||    
T  17867361 cccccaaaaattttgtaaaatgtccacacttctctaagctgtagaagaa 17867409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 429 - 476
Target Start/End: Original strand, 43403894 - 43403941
Alignment:
Q  429 acaaatatttaggattacttttgactacaccctttttagaacgagttt 476  Q
    |||||||||| ||||| |||||||  ||||||||||||||||||||||    
T  43403894 acaaatatttgggattgcttttgatgacaccctttttagaacgagttt 43403941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 6e-42; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 67 - 245
Target Start/End: Complemental strand, 14096474 - 14096295
Alignment:
Q  67 aagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaacttgtccatggtgggacatatg 166  Q
    |||||||||||||||||||    |||||||||||  ||| |||||||  |||||||||  |||||||| ||||||||||||||| ||||||| |||||||    
T  14096474 aagaaaaatcatgtgtagagcgtgtaccacaatatcatagagaccaaacaaatctaacggttaagatcttgaaataaacttgtctatggtggaacatatg 14096375  T
Q  167 gagcaagtggtccatattaaaatttgt-cctacatctgacgtgtcatgacttgaaatttgattggctgaattaaacgact 245  Q
     | |||||| ||||||||| ||||||| || ||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  14096374 aaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgtcttgaaatctgattggctgaattaaacgact 14096295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 36 - 157
Target Start/End: Original strand, 18977078 - 18977200
Alignment:
Q  36 gggaaataaa-aggagagcgaattggtactagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatc 134  Q
    |||||||||| |||||||  ||||||||||||||||||| | |||||||||||  |||||||||||| ||| |||| |||||||||||||  ||||||||    
T  18977078 gggaaataaagaggagagataattggtactagaagaaaagttatgtgtagatggtgtaccacaataacatagagactaagtaaatctaactgttaagatc 18977177  T
Q  135 atgaaataaacttgtccatggtg 157  Q
    |||||||||||||||||||||||    
T  18977178 atgaaataaacttgtccatggtg 18977200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 558 - 669
Target Start/End: Original strand, 18559840 - 18559952
Alignment:
Q  558 gacagacaaggctagaatcatgctctccattagtataatcccc-caaaacttttgtaaaatgtccacacttctctgagcttcagaagaacaaacatttgc 656  Q
    ||||||||| |||||| || |||||  |||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||    
T  18559840 gacagacaaagctagattcgtgctcctcattagtataatcccctcaaaacttttgtaaaatgttcacacttctctgaacttcagaagaacaaacagttgc 18559939  T
Q  657 agcatgcactggt 669  Q
    || ||||||||||    
T  18559940 agtatgcactggt 18559952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 37079048 - 37078947
Alignment:
Q  43 aaaaggagagcgaattggtactagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaata 142  Q
    |||||||||| |||||||||||||||||||| |||||||||||||  |||||||||||| ||| ||| ||||||||||||||  ||||||||||||||||    
T  37079048 aaaaggagagagaattggtactagaagaaaattcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaaata 37078949  T
Q  143 aa 144  Q
    ||    
T  37078948 aa 37078947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 15330833 - 15330735
Alignment:
Q  46 aggagagcgaattggtactagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaa 144  Q
    |||||||  |||||||||||||||||||||||||||||||||  |||||||||||| ||| ||| ||||||||||||||| |||| |||||||||||||    
T  15330833 aggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 15330735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 37261675 - 37261773
Alignment:
Q  46 aggagagcgaattggtactagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaa 144  Q
    |||||||  |||||||||||||||||||||||||||||||||  |||||||||||| ||| ||| ||||||||||||||| |||| |||||||||||||    
T  37261675 aggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 37261773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 14810093 - 14810191
Alignment:
Q  46 aggagagcgaattggtactagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaa 144  Q
    |||||||  |||||||||||||||||||||||||||||||||  |||||||||||| ||| ||| ||| ||||||||||| |||| |||||||||||||    
T  14810093 aggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaaataaatctaaccattaaaatcatgaaataaa 14810191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 16429962 - 16429864
Alignment:
Q  46 aggagagcgaattggtactagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaa 144  Q
    |||||||  |||||||||||||||||||||||||||||||||  |||||| ||||| ||| ||| ||||||||||||||| |||| |||||||||||||    
T  16429962 aggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccataataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 16429864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 17690702 - 17690604
Alignment:
Q  46 aggagagcgaattggtactagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaa 144  Q
    |||||||  |||||||||||||||||||||||||||||||||  |||||||||||| ||| ||| ||||||||||||||| |||| ||||| |||||||    
T  17690702 aggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcataaaataaa 17690604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 427 - 492
Target Start/End: Original strand, 21949895 - 21949960
Alignment:
Q  427 tcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactact 492  Q
    |||||||||||| ||||| ||||||| ||||||||||||||||||||||| |||||||| ||||||    
T  21949895 tcacaaatatttgggattgcttttgattacaccctttttagaacgagtttgtatgtgctcactact 21949960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 33755075 - 33755146
Alignment:
Q  73 aatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaa 144  Q
    |||||||||||||  |  ||||||||||| ||||||||||||||||||||||| |||| |||||||||||||    
T  33755075 aatcatgtgtagacaatataccacaataacatatagaccaagtaaatctaaccattaatatcatgaaataaa 33755146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 597 - 639
Target Start/End: Original strand, 21950067 - 21950109
Alignment:
Q  597 cccccaaaacttttgtaaaatgtccacacttctctgagcttca 639  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  21950067 cccccaaaacttttgtaaaatgtccacacttctctgagcttca 21950109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 7089278 - 7089225
Alignment:
Q  91 taccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaa 144  Q
    ||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||||    
T  7089278 taccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaa 7089225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 423 - 476
Target Start/End: Original strand, 41411516 - 41411569
Alignment:
Q  423 acagtcacaaatatttaggattacttttgactacaccctttttagaacgagttt 476  Q
    |||||||||||||||| ||||| ||||||| |||||||||||| ||||||||||    
T  41411516 acagtcacaaatatttgggattgcttttgattacaccctttttggaacgagttt 41411569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 18977214 - 18977264
Alignment:
Q  195 ctacatctgacgtgtcatgacttgaaatttgattggctgaattaaacgact 245  Q
    |||||| ||||||||||| |||| |||| ||||||||||||||||||||||    
T  18977214 ctacatgtgacgtgtcatcacttaaaatctgattggctgaattaaacgact 18977264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 429 - 476
Target Start/End: Complemental strand, 40275205 - 40275158
Alignment:
Q  429 acaaatatttaggattacttttgactacaccctttttagaacgagttt 476  Q
    |||||||||| ||||| |||||||  ||||||||||||||||||||||    
T  40275205 acaaatatttgggattgcttttgatgacaccctttttagaacgagttt 40275158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 492
Target Start/End: Complemental strand, 9447042 - 9446973
Alignment:
Q  423 acagtcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactact 492  Q
    ||||||||| |||||| ||||| |||||||  ||||||||||| ||||| |||| | |||||| ||||||    
T  9447042 acagtcacatatatttgggattgcttttgatcacaccctttttggaacgcgtttgtgtgtgctcactact 9446973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 498
Target Start/End: Complemental strand, 14555960 - 14555887
Alignment:
Q  425 agtcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgct 498  Q
    ||||||| |||||| ||||| |||||||  ||||||||||| |||||||||| ||| || | ||| ||||||||    
T  14555960 agtcacatatatttgggattgcttttgatcacaccctttttggaacgagtttgtatatgatcactgcttgtgct 14555887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 2e-39; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 67 - 245
Target Start/End: Complemental strand, 19436890 - 19436711
Alignment:
Q  67 aagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaacttgtccatggtgggacatatg 166  Q
    ||||||||||||||||| | |  |||||||||||| ||| |||||||  |||||||||  |||||||| ||||||||||||||| ||||||| |||||||    
T  19436890 aagaaaaatcatgtgtatagggtgtaccacaataacatagagaccaaacaaatctaactgttaagatcttgaaataaacttgtctatggtggaacatatg 19436791  T
Q  167 gagcaagtggtccatattaaaatttgt-cctacatctgacgtgtcatgacttgaaatttgattggctgaattaaacgact 245  Q
     | |||||| ||||||||| ||||||| || |||| |||||| ||||| |||||||| ||||||||||||||||||||||    
T  19436790 aaacaagtgatccatattagaatttgtcccaacatatgacgtatcatggcttgaaatctgattggctgaattaaacgact 19436711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 29833948 - 29834123
Alignment:
Q  71 aaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaacttgtccatggtgggacatatggagc 170  Q
    ||||||||||| ||| |   ||||||||||| ||| |||||||  |||||||||  |||||||| ||||||||||||||| ||||||| ||||||| |||    
T  29833948 aaaatcatgtgcagagggtttaccacaataacatagagaccaaacaaatctaactgttaagatcttgaaataaacttgtctatggtggaacatatgaagc 29834047  T
Q  171 aagtggtccatattaaaatttgt-cctacatctgacgtgtcatgacttgaaatttgattggctgaattaaacgact 245  Q
    ||||| ||||||||| | ||||| || ||||||||| ||||||| |||||||| ||||||||||||||||||||||    
T  29834048 aagtgatccatattagagtttgtcccaacatctgacatgtcatggcttgaaatctgattggctgaattaaacgact 29834123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 47328043 - 47327942
Alignment:
Q  43 aaaaggagagcgaattggtactagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaata 142  Q
    |||||||||| |||||||||||||||||||| |||||||||||||  |||||||||||| ||| ||| ||||||||||||||  ||||||||||||||||    
T  47328043 aaaaggagagagaattggtactagaagaaaattcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaaata 47327944  T
Q  143 aa 144  Q
    ||    
T  47327943 aa 47327942  T

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Target: chr7; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 110 - 231
Target Start/End: Complemental strand, 29258562 - 29258440
Alignment:
Q  110 ccaagtaaatctaacctttaa-gatcatgaaataaacttgtccatggtgggacatatggagcaagtggtccatattaaaatttgtcctacatctgacgtg 208  Q
    |||||||||||||||| |||| ||| |||||||||||||||||| ||||| ||| |||||||||||| ||||| ||| |||||||||   ||||||||||    
T  29258562 ccaagtaaatctaaccgttaaagattatgaaataaacttgtccacggtggaacacatggagcaagtgatccatgttagaatttgtccattatctgacgtg 29258463  T
Q  209 tcatgacttgaaatttgattggc 231  Q
    |||| ||||||||| ||||||||    
T  29258462 tcatcacttgaaatctgattggc 29258440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 45972521 - 45972423
Alignment:
Q  46 aggagagcgaattggtactagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaa 144  Q
    |||||||  |||||||||||||||||||||||||||||||||  |||||||||||| ||| ||| ||||||||||||||| |||| |||||||||||||    
T  45972521 aggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 45972423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 563 - 719
Target Start/End: Complemental strand, 38836075 - 38835917
Alignment:
Q  563 acaaggctagaatcatgctctccattagtataatc-ccccaaaacttttgtaaaatgtccacacttctctgagcttcagaagaacaaacatttgcagcat 661  Q
    ||||||||||| ||||||||  |||| |||||||| ||||||||||||||||||||||| |||||  |||||||| ||||||||||||||  ||||| ||    
T  38836075 acaaggctagactcatgctcctcattggtataatcgccccaaaacttttgtaaaatgtctacact--tctgagctgcagaagaacaaacaactgcagtat 38835978  T
Q  662 gcact---ggttccaaaaccggaagtttgtctgatgttagagaggtgtggtaagttgtgat 719  Q
    |||||   |  | ||||||  |||| ||||||| || |||||||||||||||||| |||||    
T  38835977 gcactagagccttcaaaacaagaagcttgtctgttgatagagaggtgtggtaagtagtgat 38835917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 427 - 517
Target Start/End: Original strand, 8308208 - 8308298
Alignment:
Q  427 tcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgctcttcggtgaaacttgtcta 517  Q
    |||||||||||| ||||||||||||| ||||  ||||||||||||||||| |||||||| ||||||||| || ||| ||||||||||||||    
T  8308208 tcacaaatatttgggattacttttgattacattctttttagaacgagtttgtatgtgctcactacttgtacttttcagtgaaacttgtcta 8308298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 60 - 144
Target Start/End: Complemental strand, 29243462 - 29243380
Alignment:
Q  60 gtactagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaa 144  Q
    ||||||||||||||||||||||||||||  |||||||||||  ||| ||| ||||||||||||||| ||||||||||||||||||    
T  29243462 gtactagaagaaaaatcatgtgtagatggtgtaccacaata--atagagatcaagtaaatctaaccattaagatcatgaaataaa 29243380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 6442706 - 6442633
Alignment:
Q  64 tagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatg 137  Q
    ||||||||||||||||||||||||   ||||||||||| ||| ||||||| ||||||||||  |||||||||||    
T  6442706 tagaagaaaaatcatgtgtagatggtataccacaataacatagagaccaattaaatctaacagttaagatcatg 6442633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 432 - 517
Target Start/End: Complemental strand, 38836206 - 38836121
Alignment:
Q  432 aatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgctcttcggtgaaacttgtcta 517  Q
    ||||||| ||||| |||||||  ||||| ||||| |||||||||| ||| |||| |||||||||||| || |||||||||||||||    
T  38836206 aatatttgggattgcttttgataacaccatttttggaacgagtttgtatatgctcactacttgtgctttttggtgaaacttgtcta 38836121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 34094187 - 34094118
Alignment:
Q  64 tagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagat 133  Q
    ||||||||||||||||||||||||   ||||||||||| ||| ||| ||| ||||||||||| |||||||    
T  34094187 tagaagaaaaatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccgttaagat 34094118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 427 - 498
Target Start/End: Original strand, 49094543 - 49094614
Alignment:
Q  427 tcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgct 498  Q
    |||||||||||| ||||| |||||||  ||||| ||||| ||||| |||| |||||||| ||||||||||||    
T  49094543 tcacaaatatttgggattgcttttgataacaccttttttggaacgtgtttgtatgtgctcactacttgtgct 49094614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 426 - 498
Target Start/End: Original strand, 30559359 - 30559431
Alignment:
Q  426 gtcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgct 498  Q
    ||||||||| ||| ||||| |||||||  ||||||||||| |||| ||||| |||||||| || |||||||||    
T  30559359 gtcacaaatctttgggattgcttttgataacaccctttttggaacaagtttctatgtgctcacgacttgtgct 30559431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 496
Target Start/End: Original strand, 25862613 - 25862676
Alignment:
Q  433 atatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtg 496  Q
    |||||||||||| ||||| | |||||||||||| || |||||||  ||||||| ||||||||||    
T  25862613 atatttaggattgcttttaattacaccctttttggatcgagtttggatgtgctcactacttgtg 25862676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 9e-29; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 70 - 230
Target Start/End: Original strand, 13802682 - 13802843
Alignment:
Q  70 aaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaacttgtccatggtgggacatatggag 169  Q
    |||||| |||||||||||  |||||| ||||  ||| |||||||  |||||||||| |||||||||| || ||||  |||| ||||||| ||||||||||    
T  13802682 aaaaattatgtgtagatggtgtaccataatacgatagagaccaaacaaatctaaccattaagatcatcaagtaaatctgtctatggtggaacatatggag 13802781  T
Q  170 caagtggtccatattaaaatttgtcc-tacatctgacgtgtcatgacttgaaatttgattgg 230  Q
    |||||| ||||||||| ||||||||| ||| ||||||||||||| |||| |||| |||||||    
T  13802782 caagtgatccatattataatttgtccttacttctgacgtgtcatcacttaaaatctgattgg 13802843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 558 - 668
Target Start/End: Complemental strand, 40715887 - 40715776
Alignment:
Q  558 gacagacaaggctagaatcatgctctccattagtataatccccc-aaaacttttgtaaaatgtccacacttctctgagcttcagaagaacaaacatttgc 656  Q
    |||| ||||||||||| ||||||||  |||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||  |||    
T  40715887 gacaaacaaggctagactcatgctcctcattggtataatccccccaaaacttttgtaaaatgtccacacttctctgagcttcaaaagaaaaagcaactgc 40715788  T
Q  657 agcatgcactgg 668  Q
    || |||||||||    
T  40715787 agtatgcactgg 40715776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 531782 - 531684
Alignment:
Q  46 aggagagcgaattggtactagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaa 144  Q
    |||||||  |||||||||||||||||||||||||||||||||  |||||||||||| ||| ||| ||||||||||||||| |||| || ||||||||||    
T  531782 aggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaattatgaaataaa 531684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 427 - 517
Target Start/End: Complemental strand, 6596588 - 6596498
Alignment:
Q  427 tcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgctcttcggtgaaacttgtcta 517  Q
    |||||||||||||||||| ||||||| |||||||||||||||| ||||||  ||||||| ||||||| |||| ||||||||||||||||||    
T  6596588 tcacaaatatttaggattgcttttgattacaccctttttagaatgagtttggatgtgctcactacttatgcttttcggtgaaacttgtcta 6596498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 60 - 144
Target Start/End: Original strand, 30945445 - 30945527
Alignment:
Q  60 gtactagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaa 144  Q
    ||||||||||||||||||||||||||||  |||||||||||  ||| ||| ||||||||||||||| ||||||||||||||||||    
T  30945445 gtactagaagaaaaatcatgtgtagatggtgtaccacaata--atagagatcaagtaaatctaaccattaagatcatgaaataaa 30945527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 64 - 194
Target Start/End: Complemental strand, 23613705 - 23613574
Alignment:
Q  64 tagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaac-ttgtccatggtgggaca 162  Q
    ||||| |||||||||||||||| |  |||||||||||  ||  |||||||  |||||||||| |||||||| | ||| |||  || |||||||||| |||    
T  23613705 tagaacaaaaatcatgtgtagaggctgtaccacaatatcatggagaccaaacaaatctaaccgttaagatcttaaaaaaaaagttatccatggtggaaca 23613606  T
Q  163 tatggagcaagtggtccatattaaaatttgtc 194  Q
    ||| ||||||||||||||||||| ||||||||    
T  23613605 tattgagcaagtggtccatattagaatttgtc 23613574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 3879472 - 3879543
Alignment:
Q  73 aatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaa 144  Q
    |||||||||||||  |  ||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||    
T  3879472 aatcatgtgtagacaatataccacaataacatagagaccaagtaaatctaaccattaagatcatgaaataaa 3879543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 563 - 636
Target Start/End: Complemental strand, 6596452 - 6596378
Alignment:
Q  563 acaaggctagaatcatgctctccattagtataa-tcccccaaaacttttgtaaaatgtccacacttctctgagct 636  Q
    ||||||||||| ||||||||  || ||  |||| |||||||||||||||||||||| ||||||||||||||||||    
T  6596452 acaaggctagattcatgctcctcagtatgataactcccccaaaacttttgtaaaatatccacacttctctgagct 6596378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 429 - 498
Target Start/End: Complemental strand, 19168247 - 19168178
Alignment:
Q  429 acaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgct 498  Q
    |||||| ||| | ||| |||||||  |||||||||||||||||||||| |||||||| | || |||||||    
T  19168247 acaaatttttggaattgcttttgatgacaccctttttagaacgagtttgtatgtgctcaataattgtgct 19168178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 432 - 517
Target Start/End: Complemental strand, 40716013 - 40715928
Alignment:
Q  432 aatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgctcttcggtgaaacttgtcta 517  Q
    ||||||||||||| |||||||   || | |||||  ||||||||| |||||||| |||||||||| | || ||||||| |||||||    
T  40716013 aatatttaggattgcttttgatagcatcttttttgaaacgagtttgtatgtgctcactacttgtgttttttggtgaaatttgtcta 40715928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 30685 - 30783
Alignment:
Q  46 aggagagcgaattggtactagaagaaaaatcatgtgtagatgacgtaccacaataatatatagaccaagtaaatctaacctttaagatcatgaaataaa 144  Q
    |||||||  |||||||||||||||||||||||||||||||||  |||||||||||| ||| ||| ||||||||||||||| |||| ||||| |||||||    
T  30685 aggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcataaaataaa 30783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 597 - 645
Target Start/End: Original strand, 21800 - 21848
Alignment:
Q  597 cccccaaaacttttgtaaaatgtccacacttctctgagcttcagaagaa 645  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  21800 cccccaaaacttttgtaaaatgtccacacttttctgagctgcagaagaa 21848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 429 - 495
Target Start/End: Original strand, 16533 - 16599
Alignment:
Q  429 acaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgt 495  Q
    |||||||||| ||||| |||||||  |||||||| || ||||||||||||||||||| ||| |||||    
T  16533 acaaatattttggattgcttttgatcacacccttcttggaacgagtttatatgtgctcactccttgt 16599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 429 - 498
Target Start/End: Complemental strand, 18991 - 18923
Alignment:
Q  429 acaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgct 498  Q
    |||||||||| ||||| |||||||  |||||||||| ||||||||||| |||||||| | || |||||||    
T  18991 acaaatatttgggattgcttttgatgacaccctttt-agaacgagtttgtatgtgctcaataattgtgct 18923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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