View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18378_high_10 (Length: 298)
Name: NF18378_high_10
Description: NF18378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18378_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 29994634 - 29994933
Alignment:
| Q |
1 |
ttattttttgtttaacttttctaggtcaggttaacatgcctcca-------gaaattaataatatttaattgtggtgttttagttcaagctagtaatgcc |
93 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
29994634 |
ttattttttgtttaacttttctaggtcaggttaacatgtctccaagttttagtaattaataatatttaattgtggtttgttagttcaagctagtaatgcc |
29994733 |
T |
|
| Q |
94 |
aacatagttagagtgactaatttgttcttactaatctttgccataaaagaacatctagtttcagataaatatccaattcagaaaataaattggtgcttat |
193 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29994734 |
aacatagttagaatgactaatttgttcttactaatctttgccataaaagaacatctagtttcagataaatatccaattcagaaaataaattggtgcttat |
29994833 |
T |
|
| Q |
194 |
tattaattcttaatgtcaattctattgaaagtgggaatagaaaaatctatctccttatcatcttcttttgttattgaagtaccaaaaaatctggtctgtg |
293 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||| |
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| T |
29994834 |
tattaattcttaatgttaattctattgaaagtgggaatagaaaaatctatctccttatcatcttgttttgttattgaagtaccaagaaatctggtttgtg |
29994933 |
T |
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