View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18378_high_12 (Length: 237)

Name: NF18378_high_12
Description: NF18378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18378_high_12
NF18378_high_12
[»] chr2 (1 HSPs)
chr2 (14-116)||(29994511-29994613)
[»] chr3 (5 HSPs)
chr3 (22-115)||(21789640-21789733)
chr3 (45-110)||(5925598-5925663)
chr3 (54-115)||(13646954-13647015)
chr3 (30-94)||(8751620-8751684)
chr3 (44-115)||(29677949-29678023)
[»] chr7 (2 HSPs)
chr7 (30-115)||(6216578-6216663)
chr7 (35-115)||(25121657-25121737)
[»] scaffold0004 (1 HSPs)
scaffold0004 (37-115)||(245208-245286)
[»] chr4 (1 HSPs)
chr4 (22-106)||(21800570-21800652)
[»] chr8 (1 HSPs)
chr8 (33-105)||(14264890-14264962)
[»] chr1 (1 HSPs)
chr1 (30-98)||(35952242-35952310)


Alignment Details
Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 116
Target Start/End: Complemental strand, 29994613 - 29994511
Alignment:
Q  14 tcttttaagttcatttgctaatcaccatatttttgagttttctcctttatgtattgaacctttccttattaatgatatgagttaattttgcttttgttaa 113  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29994613 tcttttaagttcatttgctagtcaccatatttttgagttttcttctttatgtattgaacctttccttattaatgatatgagttaattttgcttttgtcaa 29994514  T
Q  114 aag 116  Q
    |||    
T  29994513 aag 29994511  T

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Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 21789733 - 21789640
Alignment:
Q  22 gttcatttgctaatcaccatatttttgagttttctcctttatgtattgaacctttccttattaatgatatgagttaattttgcttttgttaaaa 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21789733 gttcatttgctagtcaccatatttttgagttttctcctttatgtattgaacctttccttattaatgatatgagttaattttgcttttgtcaaaa 21789640  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 5925663 - 5925598
Alignment:
Q  45 tttgagttttctcctttatgtattgaacctttccttattaatgatatgagttaattttgcttttgt 110  Q
    |||||||||  | |||| ||||||||||| |||||||||||||||| |||||||||||||||||||    
T  5925663 tttgagtttctttctttttgtattgaacccttccttattaatgatacgagttaattttgcttttgt 5925598  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 13646954 - 13647015
Alignment:
Q  54 tctcctttatgtattgaacctttccttattaatgatatgagttaattttgcttttgttaaaa 115  Q
    |||||||| |||||| ||| |||||| |||||||||||||||||||||||||||||| ||||    
T  13646954 tctcctttttgtattaaacttttcctaattaatgatatgagttaattttgcttttgtaaaaa 13647015  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 8751684 - 8751620
Alignment:
Q  30 gctaatcaccatatttttgagttttctcctttatgtattgaacctttccttattaatgatatgag 94  Q
    |||| ||||| | ||||||||||||||||||| ||| ||||||  ||||||||||||||||||||    
T  8751684 gctagtcaccgtgtttttgagttttctcctttttgttttgaactcttccttattaatgatatgag 8751620  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 29678023 - 29677949
Alignment:
Q  44 ttttgagttttctcctttatgtattgaacctttccttattaatga----tatgagttaattttgcttttgttaaaa 115  Q
    ||||||||||| |||||| ||||||||| | || |||||||||||    |||||||||||||||||||||| ||||    
T  29678023 ttttgagttttttccttt-tgtattgaatcctttcttattaatgaatgatatgagttaattttgcttttgtcaaaa 29677949  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 6216578 - 6216663
Alignment:
Q  30 gctaatcaccatatttttgagttttctcctttatgtattgaacctttccttattaatgatatgagttaattttgcttttgttaaaa 115  Q
    |||||||||||| |||| ||| |||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||| ||||    
T  6216578 gctaatcaccatgttttcgagatttctcctttttgtattgaacatttccttattaataatatgagttaattttgcttttgtaaaaa 6216663  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 115
Target Start/End: Complemental strand, 25121737 - 25121657
Alignment:
Q  35 tcaccatatttttgagttttctcctttatgtattgaacctttccttattaatgatatgagttaattttgcttttgttaaaa 115  Q
    ||||||| || ||||||| |||||||| ||||| ||| ||||| |||||||||||||||||||||||||||||||| ||||    
T  25121737 tcaccatgttcttgagttctctcctttttgtatcgaatctttctttattaatgatatgagttaattttgcttttgtcaaaa 25121657  T

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Target: scaffold0004 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 245208 - 245286
Alignment:
Q  37 accatatttttgagttttctcctttatgtattgaacctttccttattaatgatatgagttaattttgcttttgttaaaa 115  Q
    ||||| ||||||||||||||||||| ||||| ||||| || |||||||||||||||||||||||| |||||||| ||||    
T  245208 accatgtttttgagttttctcctttttgtatcgaaccctttcttattaatgatatgagttaatttagcttttgtaaaaa 245286  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 21800652 - 21800570
Alignment:
Q  22 gttcatttgctaatcaccatatttttgagttttctcctttatgtattgaacctttccttattaatgatatgagttaattttgctt 106  Q
    ||||||| |||| |||||||| |||| || |||||||||| | |||||||| ||||||||||||||  |||||| ||||||||||    
T  21800652 gttcattggctagtcaccatagtttttagctttctcctttttatattgaacatttccttattaatg--atgagtaaattttgctt 21800570  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 14264962 - 14264890
Alignment:
Q  33 aatcaccatatttttgagttttctcctttatgtattgaacctttccttattaatgatatgagttaattttgct 105  Q
    ||||||||| |||||||||||||||||   || |||||||  || |||||||||||||| |||||||||||||    
T  14264962 aatcaccatgtttttgagttttctcctacttgcattgaacaatttcttattaatgatatcagttaattttgct 14264890  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 35952242 - 35952310
Alignment:
Q  30 gctaatcaccatatttttgagttttctcctttatgtattgaacctttccttattaatgatatgagttaa 98  Q
    |||| |||||| |||||| | | |||||||   |||||||||||||| ||||||||||||| |||||||    
T  35952242 gctagtcaccaaatttttaaatattctcctacttgtattgaaccttttcttattaatgatacgagttaa 35952310  T

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