View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18378_high_2 (Length: 520)
Name: NF18378_high_2
Description: NF18378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18378_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 505
Target Start/End: Original strand, 14984374 - 14984865
Alignment:
| Q |
19 |
aaaattggggttcaa---tagttgaaccggatgacaaataaataaaaggtattaaaaaagtacagtaagaacatggaaaaacgattttgacagtgcagaa |
115 |
Q |
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| T |
14984374 |
aaaattggggttcaactatagttgaaccggatgacaaataaataaaaggtattaaaaaagtacagtaagaacatggaaaaacgattttgacagtgcagaa |
14984473 |
T |
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| Q |
116 |
gctttaaagattgtcagcattcccatatcagtacgttcagcataccatctcttgtgcaccaacnnnnnnn-cctctgtccaggtccatcaaccgacagag |
214 |
Q |
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| T |
14984474 |
gctttaaagattgtcagcattcccatatcagtacgttcagcataccatctcttgtgcaccaacaaagaaaacctccgtccaggtccatcaaccgacaggg |
14984573 |
T |
|
| Q |
215 |
atggtaaattatggaatgatgtttggaaggctcctatcccaaacaagatcaaaacttttatgtggagacttgctaaaaacattctgcccactagagcaaa |
314 |
Q |
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| T |
14984574 |
atggtaaattatggaatgatatttggaaggctcctatcccaaacaagatcaaaacttttatgtggagacttgctaaaaacattctgcccactagagcaaa |
14984673 |
T |
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| Q |
315 |
tctccnnnnnnn-ggtattcatttagacactgtatgccctctctgccactcatccatagaaaatgtgagccatctgtatatgaattgtaatctagcacgt |
413 |
Q |
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| T |
14984674 |
tctccaaaaaaaaggtattcatttagacactgtatgccctctctgccactcatccatagaaaatgtgagccatctgtatatgaattgtaatctagcatgt |
14984773 |
T |
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| Q |
414 |
ttgtccttatttgcctcacctttaggcatacaaccctctgtgaatgttgatctaaactgctggatcctagagtggctgaactgtgatgatgt |
505 |
Q |
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| T |
14984774 |
ttgtccttatttgcctcacctttaggcatacaaccccctgtgaatgttgatctaaactgctggatcctagagtggctgaactgtaatgatgt |
14984865 |
T |
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Back To:
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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 24553514 - 24553445
Alignment:
| Q |
250 |
atcccaaacaagatcaaaacttttatgtggagacttgctaaaaacattctgcccactagagcaaatctcc |
319 |
Q |
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||||||||||| ||||||| || |||||||| |||||||| || ||| ||||||||||| ||||||||| |
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| T |
24553514 |
atcccaaacaaaatcaaaaacttcatgtggaggcttgctaagaatattttgcccactagatcaaatctcc |
24553445 |
T |
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