View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18378_high_5 (Length: 410)
Name: NF18378_high_5
Description: NF18378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18378_high_5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 9e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 235 - 410
Target Start/End: Original strand, 26881255 - 26881433
Alignment:
| Q |
235 |
taggttataaattgtaaaactaatcaagatgcaagaa-tc--cccgtacattctacacaacgttataaattgcaaaatcaaaactatataagcattagtt |
331 |
Q |
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| T |
26881255 |
taggttataaattgtaaaactaatcaagatgcaagaactcatcccgtacattctacacaacgttataaattgcaaaatcaaaactatataagcattagtt |
26881354 |
T |
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| Q |
332 |
ccatgggagatcaaatccacattccttgagtatccaaacaagtgtaatattagagttctttcaacaataatttactttt |
410 |
Q |
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| T |
26881355 |
ccatgggagatcaaatccaaattccttgagtatccaaacaagtgtaatattagagttctttcaacaataatttactttt |
26881433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 17 - 180
Target Start/End: Original strand, 26881087 - 26881250
Alignment:
| Q |
17 |
agaggaatgtggactcaccaaaatgaagttgttcccaaggccatgatgcttagagaaatggtgaaagccggtctccttttggtggaggaggttgttttaa |
116 |
Q |
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| T |
26881087 |
agaggaatgtggactcaccaaaatgaagttgttcccaaggccatgatacttagagaaatggtgaaagccggtctccttttggtcgaggaggttgttttaa |
26881186 |
T |
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| Q |
117 |
taggagtttatgttccaatcgaggaagcaaccaggcgggaattagggaacaagagaagaacaca |
180 |
Q |
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| T |
26881187 |
taggagtttatgttctaatcgaggaagcaacgaggcgggaattacggaacaagagaagaacaca |
26881250 |
T |
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