View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18378_high_6 (Length: 399)

Name: NF18378_high_6
Description: NF18378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18378_high_6
NF18378_high_6
[»] chr5 (5 HSPs)
chr5 (12-374)||(16809532-16809897)
chr5 (12-67)||(21170898-21170953)
chr5 (14-67)||(21166277-21166330)
chr5 (228-297)||(21170665-21170733)
chr5 (228-297)||(21166044-21166112)
[»] scaffold0608 (1 HSPs)
scaffold0608 (75-226)||(6095-6246)
[»] chr1 (2 HSPs)
chr1 (75-226)||(11110658-11110809)
chr1 (194-235)||(11821951-11821992)
[»] chr8 (2 HSPs)
chr8 (75-151)||(13109877-13109953)
chr8 (75-155)||(18672508-18672588)
[»] chr4 (3 HSPs)
chr4 (75-235)||(24476310-24476471)
chr4 (262-311)||(41635256-41635305)
chr4 (261-314)||(42454954-42455007)
[»] chr6 (2 HSPs)
chr6 (200-298)||(3634435-3634537)
chr6 (113-190)||(6038988-6039065)


Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 12 - 374
Target Start/End: Original strand, 16809532 - 16809897
Alignment:
Q  12 atgaatcaacaatgtgtttgaagattaaaaattaaaggacttaatattctaaaggcnnnnnnncttaaagaaagataaattgcattgcattgaaatgtaa 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||       ||||||||||||||||||| |||||||||||||||||    
T  16809532 atgaatcaacaatgtgtttgaagattaaaaattaaaagacttaaaattctaaaggcaaaaaaacttaaagaaagataaattgtattgcattgaaatgtaa 16809631  T
Q  112 gtggttcatcaaatctttacctaaattctatgactcttttctctctatgatgtgtactttgaattttagaattatgtaagagtaattcgtgacccgtttt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||  ||||||||||||||||| ||||||||    
T  16809632 gtggttcatcaaatctttacctaaattctatgactcttttctctctacgatgtgtactttgagttttagaatc-tgtaagagtaattcgtgccccgtttt 16809730  T
Q  212 tcctataaagaactattatatatatgagaaaataactagtcagactagtggctagaaactacatcttttcgacaactttagcatgctctccacgtgtctg 311  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  16809731 tcctataaagaactactatatataagagaaaataactagtcagactagcggctagaaactacatcttttcgacaactttagcatgctctccacgtgtctc 16809830  T
Q  312 aacgttaag-cttgcatcttcaaagaaattgaacc---cttctagttgaaaaccccatacctgtcaa 374  Q
    |||| |||| |||||||||||||||||||| ||||   |||||||| ||||||||||||||||||||    
T  16809831 aacgataagccttgcatcttcaaagaaattaaacccttcttctagtcgaaaaccccatacctgtcaa 16809897  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 21170953 - 21170898
Alignment:
Q  12 atgaatcaacaatgtgtttgaagattaaaaattaaaggacttaatattctaaaggc 67  Q
    |||||||||||||||||||||||||| |||| |||| ||||||  |||||||||||    
T  21170953 atgaatcaacaatgtgtttgaagattcaaaactaaaagacttagaattctaaaggc 21170898  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 21166330 - 21166277
Alignment:
Q  14 gaatcaacaatgtgtttgaagattaaaaattaaaggacttaatattctaaaggc 67  Q
    |||||||||||||||||||||||| |||| |||| ||||||  |||||||||||    
T  21166330 gaatcaacaatgtgtttgaagattcaaaactaaaagacttagaattctaaaggc 21166277  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 297
Target Start/End: Complemental strand, 21170733 - 21170665
Alignment:
Q  228 tatatatatgagaaaataactagtcagactagtggctagaaactacatcttttcgacaactttagcatgc 297  Q
    |||| ||| |||||||||||||  |||||||  ||||| ||||||||||||||||||||||||| |||||    
T  21170733 tatacataagagaaaataactaa-cagactaacggctaaaaactacatcttttcgacaactttaacatgc 21170665  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 297
Target Start/End: Complemental strand, 21166112 - 21166044
Alignment:
Q  228 tatatatatgagaaaataactagtcagactagtggctagaaactacatcttttcgacaactttagcatgc 297  Q
    |||| ||| |||||||||||||  |||||||  ||||| ||||||||||||||||||| ||||| |||||    
T  21166112 tatacataagagaaaataactaa-cagactaacggctaaaaactacatcttttcgacagctttaacatgc 21166044  T

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Target: scaffold0608 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 75 - 226
Target Start/End: Original strand, 6095 - 6246
Alignment:
Q  75 cttaaagaaagataaattgcattgcattgaaatgtaagtggttcatcaaatctttacctaaattctatgactcttttctctctatgatgtgtactttgaa 174  Q
    |||||||||| |  ||||||||||||||||||||||| || |||||||||||||||| || ||| ||||||| |||||||||||    | |||||||||     
T  6095 cttaaagaaacagtaattgcattgcattgaaatgtaaatgattcatcaaatctttacatacattttatgactattttctctctacaccgggtactttgag 6194  T
Q  175 ttttagaattatgtaagagtaattcgtgacccgtttttcctataaagaacta 226  Q
    |||||||||| ||||| ||| ||| |||||||||||||||||| || |||||    
T  6195 ttttagaattctgtaatagtgatttgtgacccgtttttcctatgaaaaacta 6246  T

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Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 75 - 226
Target Start/End: Original strand, 11110658 - 11110809
Alignment:
Q  75 cttaaagaaagataaattgcattgcattgaaatgtaagtggttcatcaaatctttacctaaattctatgactcttttctctctatgatgtgtactttgaa 174  Q
    |||||||||| |  ||||||||||||||||||||||| || |||||||||||||||| || ||| ||||||| |||||||||||    | |||||||||     
T  11110658 cttaaagaaacagtaattgcattgcattgaaatgtaaatgattcatcaaatctttacatacattttatgactattttctctctacaccgggtactttgag 11110757  T
Q  175 ttttagaattatgtaagagtaattcgtgacccgtttttcctataaagaacta 226  Q
    |||||||||| ||||| ||| ||| |||||||||||||||||| || |||||    
T  11110758 ttttagaattctgtaatagtgatttgtgacccgtttttcctatgaaaaacta 11110809  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 11821951 - 11821992
Alignment:
Q  194 taattcgtgacccgtttttcctataaagaactattatatata 235  Q
    ||||| ||||||||||||||||||||| ||||||||| ||||    
T  11821951 taatttgtgacccgtttttcctataaaaaactattatttata 11821992  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 75 - 151
Target Start/End: Original strand, 13109877 - 13109953
Alignment:
Q  75 cttaaagaaagataaattgcattgcattgaaatgtaagtggttcatcaaatctttacctaaattctatgactctttt 151  Q
    |||||||||| |||||||||||||||||||| |  |  ||||||||||||||||||| || ||| | ||||||||||    
T  13109877 cttaaagaaaaataaattgcattgcattgaattaaagatggttcatcaaatctttacatatattttgtgactctttt 13109953  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 155
Target Start/End: Complemental strand, 18672588 - 18672508
Alignment:
Q  75 cttaaagaaagataaattgcattgcattgaaatgtaagtggttcatcaaatctttacctaaattctatgactcttttctct 155  Q
    |||||||||| ||||||| |||||||||||| |  |  || |||||||||||||||| || | | | ||||||||||||||    
T  18672588 cttaaagaaaaataaattacattgcattgaattaaagatgcttcatcaaatctttacatacactttgtgactcttttctct 18672508  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 235
Target Start/End: Original strand, 24476310 - 24476471
Alignment:
Q  75 cttaaagaaagataaattgcattgcattgaaatgtaa-gtggttcatcaaatctttacctaaattctatgactcttttctctctatgatgtgtactttga 173  Q
    ||||||||||  |||||||||||||||||||||  || |||||| | |||||| ||||  | ||||||||||| ||||||||||| | |  |||||||||    
T  24476310 cttaaagaaatgtaaattgcattgcattgaaataaaatgtggtttagcaaatcattacaaacattctatgactattttctctctaggcttagtactttga 24476409  T
Q  174 attttagaattatgtaagagtaattcgtgacccgtttttcctataaagaactattatatata 235  Q
     | || ||||| |||||  |  ||| |||| ||| ||||||||| ||  |||| ||||||||    
T  24476410 gtgtttgaattctgtaaatgagatttgtgatccgcttttcctatgaaacactactatatata 24476471  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 41635305 - 41635256
Alignment:
Q  262 gctagaaactacatcttttcgacaactttagcatgctctccacgtgtctg 311  Q
    |||| |||||| |||||||||||||||||||| || | ||||||||||||    
T  41635305 gctaaaaactaaatcttttcgacaactttagcttgttttccacgtgtctg 41635256  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 314
Target Start/End: Original strand, 42454954 - 42455007
Alignment:
Q  261 ggctagaaactacatcttttcgacaactttagcatgctctccacgtgtctgaac 314  Q
    |||| ||||||| |||||||| ||||||||||| | || |||||||||||||||    
T  42454954 ggcttgaaactaaatcttttcaacaactttagctttctttccacgtgtctgaac 42455007  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 298
Target Start/End: Original strand, 3634435 - 3634537
Alignment:
Q  200 gtgacccgtttttcctataaagaactattatat----atatgagaaaataactagtcagactagtggctagaaactacatcttttcgacaactttagcat 295  Q
    |||||||||||||||||| || ||||| |||||    ||| ||||||||||||| ||| || |  ||||||||||||   | |||||||| |||||||||    
T  3634435 gtgacccgtttttcctatgaaaaactactatatatgcataagagaaaataactaatcataccaacggctagaaactattccatttcgacagctttagcat 3634534  T
Q  296 gct 298  Q
    |||    
T  3634535 gct 3634537  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 6038988 - 6039065
Alignment:
Q  113 tggttcatcaaatctttacctaaattctatgactcttttctctctatgatgtgtactttgaattttagaattatgtaa 190  Q
    ||||||| ||||||||||| || ||| | ||||||||||||||||| | || ||||||||| | || ||||| |||||    
T  6038988 tggttcaacaaatctttacatacattatgtgactcttttctctctacgctgggtactttgagtgtttgaattctgtaa 6039065  T

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