View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18378_high_7 (Length: 311)
Name: NF18378_high_7
Description: NF18378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18378_high_7 |
 | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 7 - 309
Target Start/End: Complemental strand, 30148604 - 30148302
Alignment:
| Q |
7 |
cttccaatactgaattccacccgcaatgactcaagaacccgccaacaatccgatgacccaatatcgccatttgtggtgcccaacccctcaccacaatccc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30148604 |
cttccaatactgaattccacccgcaatgactcaagaacccgccaacaatccgatgacccaatatcgccatttgtggtgcccaacccctcaccacaatccc |
30148505 |
T |
|
| Q |
107 |
cctacccgaaacacgatcctcaaacccctccggcaccaatccataaccttcctccaactgctctgccgtggaaggctctttgaccacccaaacaaatggt |
206 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30148504 |
cctacccgaaacacaatcctcaaacccctccggcaccaatccataaccttcctccaactgctctgccgtggaaggctctttgaccacccaaacaaatggt |
30148405 |
T |
|
| Q |
207 |
gtcccagacctctccaacccgaatgccaacgcctccatctgttcctttttaagtagcttctgactcccaaaacaaacatacaacaccgaaccatcgtcct |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30148404 |
gtcccagacctctccaacccgaatgccaacgcctccatctgttcctttttaagtagcttctgactcccaaaacaaacatacaacaccgaaccatcttcct |
30148305 |
T |
|
| Q |
307 |
cca |
309 |
Q |
| |
|
||| |
|
|
| T |
30148304 |
cca |
30148302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 7 - 301
Target Start/End: Original strand, 141025 - 141319
Alignment:
| Q |
7 |
cttccaatactgaattccacccgcaatgactcaagaacccgccaacaatccgatgacccaatatcgccatttgtggtgcccaacccctcaccacaatccc |
106 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| ||||| || |||| ||||||||| |||||||| || ||||| |||||||| ||||||||||||| |
|
|
| T |
141025 |
cttccaacaccgaattccacccgcaatgactcaaaaacccacccacaacccgatgacctaatatcgctatctgtgggacccaacccttcaccacaatccc |
141124 |
T |
|
| Q |
107 |
cctacccgaaacacgatcctcaaacccctccggcaccaatccataaccttcctccaactgctctgccgtggaaggctctttgaccacccaaacaaatggt |
206 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||||||||||||| | ||||| |||| || || | || ||||||||||||||| | |
|
|
| T |
141125 |
cctacccgaaacccaatcctcaaacccctccggcaccaatccataaccttcctctatttgctccaccgtcgacggaaccttcaccacccaaacaaatcgg |
141224 |
T |
|
| Q |
207 |
gtcccagacctctccaacccgaatgccaacgcctccatctgttcctttttaagtagcttctgactcccaaaacaaacatacaacaccgaaccatc |
301 |
Q |
| |
|
|||| || || ||||||||||||||||| |||||||| || ||| || | | || |||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
141225 |
atcccggatctttccaacccgaatgccaatgcctccatttgatcccttctcattaacttctgactcccaaaacaaacatacaacactgacccatc |
141319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University