View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18378_low_11 (Length: 286)

Name: NF18378_low_11
Description: NF18378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18378_low_11
NF18378_low_11
[»] chr3 (4 HSPs)
chr3 (56-273)||(34897722-34897940)
chr3 (6-78)||(1995501-1995573)
chr3 (1-67)||(52859280-52859346)
chr3 (6-63)||(30235416-30235472)
[»] chr6 (6 HSPs)
chr6 (1-69)||(2800566-2800634)
chr6 (1-69)||(7215807-7215875)
chr6 (26-68)||(9952993-9953035)
chr6 (1-59)||(23936305-23936365)
chr6 (1-61)||(17828532-17828591)
chr6 (4-60)||(29229149-29229204)
[»] chr1 (8 HSPs)
chr1 (1-69)||(39426262-39426330)
chr1 (1-67)||(35534741-35534805)
chr1 (1-70)||(32887735-32887803)
chr1 (1-65)||(26860010-26860073)
chr1 (6-60)||(49384627-49384680)
chr1 (5-61)||(26372308-26372362)
chr1 (4-68)||(1228496-1228560)
chr1 (4-68)||(18976260-18976324)
[»] chr8 (4 HSPs)
chr8 (1-67)||(42761765-42761831)
chr8 (1-70)||(21360328-21360400)
chr8 (6-72)||(20169125-20169190)
chr8 (14-63)||(42338008-42338056)
[»] chr7 (4 HSPs)
chr7 (1-68)||(47270601-47270668)
chr7 (6-72)||(44390835-44390900)
chr7 (1-30)||(29844343-29844372)
chr7 (4-69)||(33450562-33450627)
[»] chr2 (9 HSPs)
chr2 (1-68)||(4446852-4446919)
chr2 (1-68)||(30217525-30217592)
chr2 (1-67)||(30709162-30709228)
chr2 (1-69)||(30721564-30721630)
chr2 (1-70)||(19908832-19908899)
chr2 (4-68)||(2063409-2063472)
chr2 (18-67)||(6946335-6946384)
chr2 (8-69)||(31618724-31618783)
chr2 (1-61)||(22061433-22061492)
[»] chr4 (6 HSPs)
chr4 (1-69)||(15178628-15178696)
chr4 (1-66)||(36532677-36532741)
chr4 (4-60)||(5815267-5815322)
chr4 (4-63)||(33841766-33841824)
chr4 (6-65)||(1871334-1871392)
chr4 (4-61)||(23610697-23610754)
[»] chr5 (3 HSPs)
chr5 (2-63)||(9460597-9460657)
chr5 (34-68)||(21213953-21213987)
chr5 (4-61)||(29341050-29341106)


Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 56 - 273
Target Start/End: Complemental strand, 34897940 - 34897722
Alignment:
Q  56 aggatcctaacccctctcacccacctctattacatgttgacttggattccaacaaattctccaaaaacaaaacagtttttacaatgatattttctatttg 155  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34897940 aggatcctaacccctctcacccacctcaattacatgttgacttggattccgacaaattctccaaaaacaaaacagtttttacaatgatattttctatttg 34897841  T
Q  156 tatcaaaattatagttctaccgaacaaaacggtattgaagatgtccacttcta-nnnnnnnnatcagctgatttgtccatttctacaacatttaagaaat 254  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  34897840 tatcaaaattatagttctaccgaacaaaacggtattgaagatgtccacttctatttttttttatcagctgatttgtccatttctacaacatttaagaaat 34897741  T
Q  255 ggagagagggtttttatat 273  Q
    |||||||||||||||||||    
T  34897740 ggagagagggtttttatat 34897722  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 1995501 - 1995573
Alignment:
Q  6 tgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccctctcaccca 78  Q
    ||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||| | |||||||    
T  1995501 tgtctatctctcttcaaattgtgtacttccatttatttgataaaatgaagaggatcctaacccatgtcaccca 1995573  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 52859280 - 52859346
Alignment:
Q  1 ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacc 67  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||||||| |||||||| |||||    
T  52859280 ttatgtgtctatctctctctaaattgtgtattttcatttattttatcaaatggagaggatcataacc 52859346  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 30235472 - 30235416
Alignment:
Q  6 tgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcct 63  Q
    ||||||||||||| |||||||  |||| |||||||||||| |||||||||| ||||||    
T  30235472 tgtctatctctcttcaaattgcatact-ccatttattttaacaaatgaagatgatcct 30235416  T

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Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 2800634 - 2800566
Alignment:
Q  1 ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 69  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||    
T  2800634 ttatgtgtctatctctctccaaattgtgtatttccattaattttatcaaatggagaggatcctaacccc 2800566  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 7215875 - 7215807
Alignment:
Q  1 ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 69  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||    
T  7215875 ttatgtgtctatctctctccaaattgtgcacttccatttattttatcaaatggagaggatactaacccc 7215807  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 9953035 - 9952993
Alignment:
Q  26 gtgtacttccatttattttatcaaatgaagaggatcctaaccc 68  Q
    ||||||||||||||||||||||||||| |||||||| ||||||    
T  9953035 gtgtacttccatttattttatcaaatggagaggatcttaaccc 9952993  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 23936305 - 23936365
Alignment:
Q  1 ttatgtgtctatctctctc--caaattgtgtacttccatttattttatcaaatgaagagga 59  Q
    |||||||||||||||||||  | |||||||||||| |||| | ||||||||||| ||||||    
T  23936305 ttatgtgtctatctctctctccgaattgtgtactttcattcaatttatcaaatggagagga 23936365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 17828591 - 17828532
Alignment:
Q  1 ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 61  Q
    ||||||||||||||||||||||||||  ||| |||| ||||| || |||||| ||||||||    
T  17828591 ttatgtgtctatctctctccaaattgcatac-tccaattattataccaaatgtagaggatc 17828532  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 29229149 - 29229204
Alignment:
Q  4 tgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggat 60  Q
    |||||||||||||||||||||||  ||| |||||||||| || |||||| |||||||    
T  29229149 tgtgtctatctctctccaaattgcatac-tccatttattataccaaatggagaggat 29229204  T

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Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 39426262 - 39426330
Alignment:
Q  1 ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||    
T  39426262 ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatggagatgatactaacccc 39426330  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 35534805 - 35534741
Alignment:
Q  1 ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacc 67  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||| ||||||    
T  35534805 ttatgtgtctatctctct--aaattgtgtacttccatttattttatcaaatggagaggatactaacc 35534741  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 32887803 - 32887735
Alignment:
Q  1 ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccct 70  Q
    |||||||||||||| |||| ||| |||||||| |||||||||||||||||||||||||||||||| ||||    
T  32887803 ttatgtgtctatctttctctaaactgtgtact-ccatttattttatcaaatgaagaggatcctaatccct 32887735  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 26860073 - 26860010
Alignment:
Q  1 ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaa 65  Q
    |||||||||||||||||| |||||| ||||| |||||||||||||||||||  ||| ||||||||    
T  26860073 ttatgtgtctatctctcttcaaattatgtac-tccatttattttatcaaatagagatgatcctaa 26860010  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 49384680 - 49384627
Alignment:
Q  6 tgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggat 60  Q
    |||||||||||||| ||||||| || |||||||||||||| |||||| |||||||    
T  49384680 tgtctatctctctctaaattgtata-ttccatttattttaacaaatggagaggat 49384627  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 26372308 - 26372362
Alignment:
Q  5 gtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 61  Q
    ||||||||||||||  ||||| | |||||||||||||||||||||||  ||||||||    
T  26372308 gtgtctatctctct--aaattatctacttccatttattttatcaaattgagaggatc 26372362  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 1228560 - 1228496
Alignment:
Q  4 tgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 68  Q
    ||||||| |||||||||||||||   |  |||||||||||||  |||||||||||||| ||||||    
T  1228560 tgtgtctgtctctctccaaattgcaaaactccatttattttagtaaatgaagaggatcttaaccc 1228496  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 18976324 - 18976260
Alignment:
Q  4 tgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 68  Q
    |||||||||||||||||||||||   |  || |||||||||| |||||| |||||||| ||||||    
T  18976324 tgtgtctatctctctccaaattgcaaaactcaatttattttagcaaatggagaggatcttaaccc 18976260  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 42761765 - 42761831
Alignment:
Q  1 ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacc 67  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||| || |||||||||||||||||    
T  42761765 ttatgtgtctatctctcttcaaattgcgtacttccatttattttattaagtgaagaggatcctaacc 42761831  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 21360328 - 21360400
Alignment:
Q  1 ttatgtgtctatctctctccaaattgtgta----cttccatttattttatcaaatgaagaggatcctaacccct 70  Q
    |||||||| |||||||||||||||| ||||    |||| ||||||||||||||||| |||||||||||||||||    
T  21360328 ttatgtgtttatctctctccaaattatgtatgtacttc-atttattttatcaaatggagaggatcctaacccct 21360400  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 20169125 - 20169190
Alignment:
Q  6 tgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccctct 72  Q
    |||||||||||||||||||||  | ||||||||||||||   ||||| |||||||| ||||||||||    
T  20169125 tgtctatctctctccaaattgcat-cttccatttatttttataaatggagaggatcttaacccctct 20169190  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 42338056 - 42338008
Alignment:
Q  14 tctctccaaattgtgtacttccatttattttatcaaatgaagaggatcct 63  Q
    |||||||||||| | |||||  ||||||||||||||||||||||||||||    
T  42338056 tctctccaaattatatactta-atttattttatcaaatgaagaggatcct 42338008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 47270601 - 47270668
Alignment:
Q  1 ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 68  Q
    |||||||||||||| |||| |||||||||| ||||||||||||||||||||  |||||||||||||||    
T  47270601 ttatgtgtctatctatctctaaattgtgtaattccatttattttatcaaatagagaggatcctaaccc 47270668  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 44390835 - 44390900
Alignment:
Q  6 tgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccctct 72  Q
    |||||||||||||||||||||  | ||||||||||||||   ||||| |||||||| ||||||||||    
T  44390835 tgtctatctctctccaaattgcat-cttccatttatttttataaatggagaggatcttaacccctct 44390900  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 29844343 - 29844372
Alignment:
Q  1 ttatgtgtctatctctctccaaattgtgta 30  Q
    ||||||||||||||||||||||||||||||    
T  29844343 ttatgtgtctatctctctccaaattgtgta 29844372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 33450562 - 33450627
Alignment:
Q  4 tgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 69  Q
    |||||||||||||||||||||||   |  || |||||||||| |||||| |||||||| |||||||    
T  33450562 tgtgtctatctctctccaaattgcaaaactcaatttattttagcaaatggagaggatcttaacccc 33450627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 4446919 - 4446852
Alignment:
Q  1 ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 68  Q
    |||||||||||||||||| ||||||||  ||||||||||||||||||||||| ||||||| |||||||    
T  4446919 ttatgtgtctatctctcttcaaattgtacacttccatttattttatcaaatggagaggatactaaccc 4446852  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 30217525 - 30217592
Alignment:
Q  1 ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 68  Q
    ||||||||||||||| ||| ||||||||| |||||||||||||||||||||  |||||||||||||||    
T  30217525 ttatgtgtctatctcactctaaattgtgtgcttccatttattttatcaaatagagaggatcctaaccc 30217592  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 30709162 - 30709228
Alignment:
Q  1 ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacc 67  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||| | ||| ||||||||||||||    
T  30709162 ttatgtgtctatctctctccaaattgtgtactttcattgattttataagatggagaggatcctaacc 30709228  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 30721630 - 30721564
Alignment:
Q  1 ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 69  Q
    |||||||||||||||||  ||||||||||||||| ||||||||||||||||| || ||||| |||||||    
T  30721630 ttatgtgtctatctctc--caaattgtgtacttctatttattttatcaaatggagcggatcttaacccc 30721564  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 19908832 - 19908899
Alignment:
Q  1 ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccct 70  Q
    ||||||||||||||| ||||||||||  |||| ||||||||| |||||||||||||||||| | ||||||    
T  19908832 ttatgtgtctatctc-ctccaaattgcatact-ccatttattatatcaaatgaagaggatctttacccct 19908899  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 2063409 - 2063472
Alignment:
Q  4 tgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 68  Q
    |||||||||||||||||||||||   ||| | ||||||||| |||||||||||||||| ||||||    
T  2063409 tgtgtctatctctctccaaattgcaaact-ctatttattttgtcaaatgaagaggatcttaaccc 2063472  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 6946335 - 6946384
Alignment:
Q  18 tccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacc 67  Q
    ||||||||||| | || ||||||||||||||||||  |||||||||||||    
T  6946335 tccaaattgtgcattttcatttattttatcaaatggggaggatcctaacc 6946384  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 31618783 - 31618724
Alignment:
Q  8 tctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 69  Q
    ||||||| |||||||||||| |||| |||||| ||| |||||||| ||||||||||||||||    
T  31618783 tctatctttctccaaattgtatact-ccatttcttt-atcaaatggagaggatcctaacccc 31618724  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 22061492 - 22061433
Alignment:
Q  1 ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 61  Q
    |||||||||||||||||| |||||||  ||||| |||||||||| ||||||  ||||||||    
T  22061492 ttatgtgtctatctctcttcaaattgcatactt-catttattttgtcaaattgagaggatc 22061433  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 15178696 - 15178628
Alignment:
Q  1 ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 69  Q
    |||||||| ||||||||| |||||| |||||||||||| ||||||||||||| |||| |||||||||||    
T  15178696 ttatgtgtttatctctcttcaaattatgtacttccattcattttatcaaatggagagaatcctaacccc 15178628  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 36532677 - 36532741
Alignment:
Q  1 ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaac 66  Q
    ||||||||||||||||||| |||||||| || |||||||||||||||| ||| |||||||| ||||    
T  36532677 ttatgtgtctatctctctctaaattgtgaac-tccatttattttatcagatggagaggatcttaac 36532741  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 5815322 - 5815267
Alignment:
Q  4 tgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggat 60  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||| |||||||    
T  5815322 tgtgtctatctctctcaaaattttgtact-ccatttattttatcaaatggagaggat 5815267  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 33841824 - 33841766
Alignment:
Q  4 tgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcct 63  Q
    |||||||||||||||||||||||| ||| |||||||| |||| |||||| ||||||||||    
T  33841824 tgtgtctatctctctccaaattgtatac-tccatttactttaacaaatggagaggatcct 33841766  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 1871334 - 1871392
Alignment:
Q  6 tgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaa 65  Q
    |||||||||||||||||||||  ||| |||||||||||| ||||||  ||||||||||||    
T  1871334 tgtctatctctctccaaattgcatac-tccatttattttgtcaaattgagaggatcctaa 1871392  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 23610697 - 23610754
Alignment:
Q  4 tgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 61  Q
    ||||||||||||||||||| |||   |  |||||||||||||||||||| ||||||||    
T  23610697 tgtgtctatctctctccaacttgcaaaactccatttattttatcaaatggagaggatc 23610754  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 9460657 - 9460597
Alignment:
Q  2 tatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcct 63  Q
    |||||||||||||||||||||||||  ||| || |||||||||| |||||| ||||||||||    
T  9460657 tatgtgtctatctctctccaaattgcatac-tctatttattttaccaaatggagaggatcct 9460597  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 21213953 - 21213987
Alignment:
Q  34 ccatttattttatcaaatgaagaggatcctaaccc 68  Q
    ||||||||||||||||||| |||||||||||||||    
T  21213953 ccatttattttatcaaatggagaggatcctaaccc 21213987  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 29341050 - 29341106
Alignment:
Q  4 tgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 61  Q
    |||||||||||||||||||||||  ||| |||||||||| || |||||| ||||||||    
T  29341050 tgtgtctatctctctccaaattgcatac-tccatttattataccaaatggagaggatc 29341106  T

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