View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18378_low_4 (Length: 466)
Name: NF18378_low_4
Description: NF18378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18378_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 17 - 448
Target Start/End: Original strand, 10601105 - 10601536
Alignment:
| Q |
17 |
aaaacactccatgaaacgaaagttaaaagaagaaccttttgttgttcatgataattctgaggttattttcattgatattggtgatgagaagatgtttgtg |
116 |
Q |
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| T |
10601105 |
aaaacactccaagaaacgaaagttaaaagaagaaccttttgttgttcatgataattctgaggttattttctttgatattggtgatgagaagatgtttgtg |
10601204 |
T |
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| Q |
117 |
gatggttatgatgttaccgagaatgtgaaaattgatgaaagtggcaggtttgatgcgaaagatggaaactttgttgacgaaaagtgtggttggacgcttg |
216 |
Q |
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| T |
10601205 |
gatggttatgatgttaccgagaatgtgaaaattgatgaaagtggcaagtttgatgcgaaagatggaaagtttgttgacgaaaagtgtggttggacacttg |
10601304 |
T |
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| Q |
217 |
aaaacccgattacaatacaatcagatgacgaacactctgttagttctgattctaatgatgatgaagaagaagaaaattatgataatgttaaacagggaga |
316 |
Q |
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| T |
10601305 |
aaaacccgattacaatacaatcagatgacgaacactctgttagttctgattctaatgatgatgaagaagaagaaaattatgataatgttaaacagggaga |
10601404 |
T |
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| Q |
317 |
aaaaagtggagcaagcgatgagtctgctgataaagatannnnnnnngtagatttggatgattctgatgagagtgatgaagaacactctgttggttctgct |
416 |
Q |
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| T |
10601405 |
aaaaagtggagcaagcgatgagtctgctgataaagatattttttttgtagatttggatgattctgatgagagtgatgaagaacactctgttggttctgct |
10601504 |
T |
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| Q |
417 |
tctgattcagattcagattccaattctgattc |
448 |
Q |
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| T |
10601505 |
tctgattcagattcagattccaattctgattc |
10601536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 295 - 402
Target Start/End: Original strand, 10601548 - 10601655
Alignment:
| Q |
295 |
atgataatgttaaacagggagaaaaaagtggagcaagcgatgagtctgctgataaagatannnnnnnngtagatttggatgattctgatgagagtgatga |
394 |
Q |
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| T |
10601548 |
atgataatgttcaagagggtgcaaaaagtggaggaagtggtgagtttgctgataaagataatttttttgttgatttggatgattctgatgagagtgatga |
10601647 |
T |
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| Q |
395 |
agaacact |
402 |
Q |
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| T |
10601648 |
agaacact |
10601655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 16992866 - 16992826
Alignment:
| Q |
165 |
tttgatgcgaaagatggaaactttgttgacgaaaagtgtgg |
205 |
Q |
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| T |
16992866 |
tttgatgctaaagatggaaagtttgttgatgaaaagtgtgg |
16992826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 411
Target Start/End: Complemental strand, 17008539 - 17008511
Alignment:
| Q |
383 |
tgagagtgatgaagaacactctgttggtt |
411 |
Q |
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| T |
17008539 |
tgagagtgatgaagaacactctgttggtt |
17008511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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