View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18379_low_1 (Length: 404)
Name: NF18379_low_1
Description: NF18379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18379_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 54 - 388
Target Start/End: Complemental strand, 19272203 - 19271869
Alignment:
| Q |
54 |
cattcctccaatactcatctactgtctcttcaatcaacttatatactatcatgcacaaaattactaatcacctaagcaagcagatagatgcataaaatgt |
153 |
Q |
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||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
19272203 |
cattcctccaatactcatctaatgtgtcttcaatcaactcatatactatcatgcacaaaattactaatcacttaagcaagcagatagatgcataaaatgt |
19272104 |
T |
|
| Q |
154 |
ccaaaatttagttacaacaacgtgaattgtgttatcctagtgtttctatctaaaatccctaaattaatttctaaaagttagtttctatggctgaaaattt |
253 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
19272103 |
ccaaaatttagttacaacaacgtgaatcgtgttatcctagtgtttctatctaaaatccctaaattaatttctaaaagttagtttctatgcctgaaaattt |
19272004 |
T |
|
| Q |
254 |
agggtttgtaaaatttagagtttgtaaaatcgtgcaataacagattaatcaccagtttcacgtttttgggaattttgaaaaattagggtttgtaaaattt |
353 |
Q |
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|| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
19272003 |
agagtttttaaaatttagagtttgtaaaatcgtgcaataacagattaatcaccaatttcacgtttttggggattttgaaaatttagggtttgtaaaattt |
19271904 |
T |
|
| Q |
354 |
aagataaattcaaatttgagagaagtagaacttac |
388 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
19271903 |
gagataaattcaaatttgagagaagtagaacttac |
19271869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 53 - 174
Target Start/End: Complemental strand, 14989974 - 14989853
Alignment:
| Q |
53 |
tcattcctccaatactcatctactgtctcttcaatcaacttatatactatcatgcacaaaattactaatcacctaagcaagcagatagatgcataaaatg |
152 |
Q |
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| T |
14989974 |
tcattcctccaatactcatctattgtgtcttcaatcaactcatatactatcatgcacaaaattactaatcacttaagcaagcagatagatgcataaaatg |
14989875 |
T |
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| Q |
153 |
tccaaaatttagttacaacaac |
174 |
Q |
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| T |
14989874 |
tcgaaaatttagttacaacaac |
14989853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 53 - 174
Target Start/End: Complemental strand, 33901615 - 33901494
Alignment:
| Q |
53 |
tcattcctccaatactcatctactgtctcttcaatcaacttatatactatcatgcacaaaattactaatcacctaagcaagcagatagatgcataaaatg |
152 |
Q |
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|||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33901615 |
tcattcctccaatactcatctattgtgtcttcaatcaactcatatactatcatgcacaaaattactaatcacttaagcaagcagatagatgcataaaatg |
33901516 |
T |
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| Q |
153 |
tccaaaatttagttacaacaac |
174 |
Q |
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|| ||||||||||||||||||| |
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| T |
33901515 |
tcgaaaatttagttacaacaac |
33901494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 50155684 - 50155746
Alignment:
| Q |
55 |
attcctccaatactcatctactgtctcttcaat-caacttatatactatcatgcacaaaatta |
116 |
Q |
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|||||||||||||||||| ||||| | ||||| ||||| ||||||||||||||||||||||| |
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| T |
50155684 |
attcctccaatactcatccactgtgtattcaagacaactcatatactatcatgcacaaaatta |
50155746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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