View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1837_high_3 (Length: 427)
Name: NF1837_high_3
Description: NF1837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1837_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 419
Target Start/End: Complemental strand, 41069111 - 41068727
Alignment:
| Q |
18 |
aaatgaggtagcatatttttcatggaagggtgttttagattattagtcacactttgtggtccttcatgggtcatgtaaattctaattcaaattcgttttc |
117 |
Q |
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| T |
41069111 |
aaatgaggtagcatatttttcttggaagggtgttttagatgattagtcacactttgtggtccttcatgggtcatgtaaattctaattcaaattcgttttc |
41069012 |
T |
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| Q |
118 |
ttttcctaatgaccccatcaccataacatggtgttcactgtaggggagtgatagattaatggacaagttgttgcactaaagattagtcaatcatagtnnn |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41069011 |
ttttcctaatgaccccatcaccataacatggtgttcactgtaggggagtgatagattaatggacaagttgttgcactaaagattagtcaatcatagta-- |
41068914 |
T |
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| Q |
218 |
nnnnnnngtatttacaaaataaaatattgacattggccaatgtaaaaattagtctctaatttctagttgtggttagggaatcaattgtccctaccttcca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41068913 |
---------------aaaataaaatattgacattggccaatgtaaaaattagtctctaatttctagttgtggttagggaatcaattgtccctaccttcca |
41068829 |
T |
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| Q |
318 |
aatccacagcttatcctaaccttatggcctacatgatccctaaacagatatccaacttgttttcatccccaaatcactcaacatctttggaaggtctgtg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41068828 |
aatccacagcttatcctaaccttatggcctacatgatccctaaacagatatccaacttgttttcatccccaaatcactcaacatctttggaaggtctgtg |
41068729 |
T |
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