View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1837_low_10 (Length: 236)
Name: NF1837_low_10
Description: NF1837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1837_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 32959491 - 32959282
Alignment:
| Q |
12 |
tcagaatcagaatcaaaatcacagtgagtcgtcgtaatttagataaaaattaaactttcaaacttcaataaatgaacggtaacaccgtgattttgcaaaa |
111 |
Q |
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| T |
32959491 |
tcagaatcagaatcagaatcacagtgagtcgtcgtaatttagataaaaattaaactttcaaacttcaataaatgaacggtaacaccgtgattttgcaaaa |
32959392 |
T |
|
| Q |
112 |
ctcgtggtgattcttatcaagcacttagacatagacaagtgaaagatg-gagaaaagtagaagtgtgattggatgtagaagagagttgaaaaaagcatac |
210 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32959391 |
ctcgcggtgattcttatcaagtacttagacatagacaagtgaaagatgagagagaagtagaagtgtgattggatgtagaagagagttgaaaaaagcatac |
32959292 |
T |
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| Q |
211 |
agcatcaaat |
220 |
Q |
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|||||||||| |
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| T |
32959291 |
agcatcaaat |
32959282 |
T |
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