View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1837_low_3 (Length: 461)
Name: NF1837_low_3
Description: NF1837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1837_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 9828512 - 9828060
Alignment:
| Q |
1 |
catattttctctacaattactcacttgttacttactagcataatggctgactttgacatcaaaatgttcttt--gcaggtacatccatgttggtgatatg |
98 |
Q |
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| T |
9828512 |
catattttctctacaattactcacttgttacttactaccataatgtctgactttgacatcaaaatgttttttttgcaggtacacccatgttggtgatatg |
9828413 |
T |
|
| Q |
99 |
tatatataccaatgggggtggagactagttttacctctctcacccccaaacaccgattattccccacaaaaatcccgaacatgtactccggt-gggtagg |
197 |
Q |
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| T |
9828412 |
tatatataccaatgggggtggagattagttttacctctctcacccccaacccccgagtatcccgcacagaaaacccgaacatgtactccggcagggttgg |
9828313 |
T |
|
| Q |
198 |
aattttgatctccatccccatctctggtagggatcgagtttcccctccatgcacccatcccctgatggtattttagtaatatcacatcgtttctcgtctt |
297 |
Q |
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||||||||| ||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9828312 |
aattttgatatccatccccgtctcttatagggatcgagtttccccaccatgcacccatcccctgatgggattttagtaatatcacatcgtttctcgtctt |
9828213 |
T |
|
| Q |
298 |
ctaacatcaatagattaacaaataagtcatatgcaccttgttcttgagaagatggcacccgattgtgttctttattcctaagcaaccgatcttccatcac |
397 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9828212 |
ctaacatcaatagattaacaaataagtcatatgcaccgtgttcttgagaagatgacacccgattgtgttctttattcctaagcaaccgatctaccatcac |
9828113 |
T |
|
| Q |
398 |
tctcattttaccctaaaacgaaaataatttaaaaatccgatctactatgagtat |
451 |
Q |
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|
| T |
9828112 |
tctcattttaccctaaaacgaaaataa-ttaaaaatccgacctactatgagtat |
9828060 |
T |
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