View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1837_low_5 (Length: 407)
Name: NF1837_low_5
Description: NF1837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1837_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 3 - 406
Target Start/End: Complemental strand, 9059454 - 9059029
Alignment:
| Q |
3 |
gagaagcatagggaaaaatccattgagaattactagaattccttcaggagggccaagggaatttcacaatcttgttcaagaaactgagaaagggtcatca |
102 |
Q |
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| T |
9059454 |
gagaatcatagggaaaaatccattgagaattactagaattccttcaggagggccaagggaatttcacaatcttgttcaagaagctgagaaagggtcatca |
9059355 |
T |
|
| Q |
103 |
acaattttaactttgaagaagaaaaatggtgttggaaataagctgtttagtcacaaaagagcttaccataggaatcggtttaatgattggtgtgttgatg |
202 |
Q |
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| T |
9059354 |
acaattttaactttgaagaagaaaaatggtgttggaaataagctgtttagtcacaaaagagcttatcataggaatcggtttaatgattggtgtgttgatg |
9059255 |
T |
|
| Q |
203 |
tgttttattttgagagttttggtaagagtgaggaccaaccctctgaaaataactcattagggtaactatatatgtgttgatcatagtatagtttgttaac |
302 |
Q |
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| T |
9059254 |
tgttttattttgagagttttggtaagagtgaggaccaaccctctgaaaataactcattagggtaactatatatgtgtagatcatagtatagtttgttaac |
9059155 |
T |
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| Q |
303 |
ttttatttgaaat----------------------tatgcttgtaaagcttttgcatttcaactaatcatgtagttagtaactgttgaaaatcataaagt |
380 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| | | |
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| T |
9059154 |
ttttatttgaaattatataaataatgctactaaattatgcttgtaaagcttttgcattttaactaatcatgtagttagtaaatgttgaaaatcatagatt |
9059055 |
T |
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| Q |
381 |
atgtataaactaattgaatttcacct |
406 |
Q |
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| T |
9059054 |
atgtataaactaattggatttcacct |
9059029 |
T |
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