View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1837_low_6 (Length: 357)
Name: NF1837_low_6
Description: NF1837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1837_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 38812148 - 38811808
Alignment:
| Q |
15 |
aaaaacagaacaagatcactcatgcttaaatcaagtaactcctccttgaacaagttttggttgaggatgctctcaaaatccaagagttcctctaacaatg |
114 |
Q |
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| T |
38812148 |
aaaaacagaacaagatcactcatgcttaaatcaagtaactcctccttgaacaagttttggttgaggatgctctcaaaatccaagagttcctctaacaatg |
38812049 |
T |
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| Q |
115 |
tttcatcccaatactcaaaatctagaacttgttcaccaagctctgatttaatccatgatggtggtggtgatgccgatgataatgatggcgttgaattgga |
214 |
Q |
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| T |
38812048 |
tttcatcccaatactcaaaatctagaacttgttcaccaagctctgatttaatccatgatggtggtggtgatgccgatgataatgatggcgttgaattgga |
38811949 |
T |
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| Q |
215 |
tgaagaagatgacttagaagaattataaaccacattgcaaggaaaatgttcatgtggaaagttgagaatggccaaagaacctctcatttc--------ca |
306 |
Q |
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| T |
38811948 |
tgaagaagatgacttagaagaattataaaccacattgcaaggaaaatgttcatgtggaaagttgagaatggccaaagaacctctcatttcaaaagcagca |
38811849 |
T |
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| Q |
307 |
tgatcataagcccttgctttgcagcttccttactagtatta |
347 |
Q |
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| T |
38811848 |
tgatcataagcccttgttttgcagcttccttactagtatta |
38811808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 15 - 304
Target Start/End: Complemental strand, 38810063 - 38809786
Alignment:
| Q |
15 |
aaaaacagaacaagatcactcatgcttaaatcaagtaactcctccttgaacaagttttggttgaggatgctctcaaaatccaagagttcctctaacaatg |
114 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
38810063 |
aaaaacagaacaaaatcactcatgcttaaatcaagtaactcctacttgaacaagtcctggttgatgatgctctcaaaatccaagagttcctctaataatt |
38809964 |
T |
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| Q |
115 |
tttcatcccaatactcaaaatctagaacttgttcaccaagctctgatttaatccatgatggtggtggtgatgccgatgataatgatggcgttgaattgga |
214 |
Q |
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| T |
38809963 |
tttcatccaaatactcaaactctataacttgttcaacaagttccgatttaacctttga---------------agatgatgatgatgaggttgaattgga |
38809879 |
T |
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| Q |
215 |
tgaagaagatgacttagaagaattataaaccacattgcaaggaa---aatgttcatgtggaaagttgagaatggccaaagaacctctcatttc |
304 |
Q |
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| T |
38809878 |
ggaagaagacggcttagaagggttatataccacactgcaaggaaaataatgttcatgaggaaagttaagaatagctgaagaacctctcatttc |
38809786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 45 - 165
Target Start/End: Complemental strand, 38822967 - 38822847
Alignment:
| Q |
45 |
tcaagtaactcctccttgaacaagttttggttgaggatgctctcaaaatccaagagttcctctaacaatgtttcatcccaatactcaaaatctagaactt |
144 |
Q |
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| T |
38822967 |
tcaagtaactcctacttgaaccagttgttattgatggtattctcaggatccaagagttcctctaataatttttcatccaaatactcaaactctataattt |
38822868 |
T |
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| Q |
145 |
gttcaccaagctctgatttaa |
165 |
Q |
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| T |
38822867 |
gttcaccaagctccgatttaa |
38822847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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