View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1837_low_7 (Length: 266)

Name: NF1837_low_7
Description: NF1837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1837_low_7
NF1837_low_7
[»] chr1 (2 HSPs)
chr1 (11-251)||(4685344-4685584)
chr1 (180-246)||(4612023-4612089)
[»] chr5 (1 HSPs)
chr5 (124-251)||(5113162-5113289)
[»] chr4 (3 HSPs)
chr4 (106-245)||(53557002-53557141)
chr4 (130-248)||(40254566-40254684)
chr4 (124-245)||(21173502-21173623)
[»] chr2 (1 HSPs)
chr2 (114-245)||(40820104-40820235)
[»] chr3 (1 HSPs)
chr3 (107-233)||(47846978-47847104)
[»] chr7 (1 HSPs)
chr7 (108-245)||(41208777-41208914)
[»] chr6 (1 HSPs)
chr6 (192-246)||(34357170-34357224)


Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 4685584 - 4685344
Alignment:
Q  11 atgaagatatagtggacgagtaacaaatttatcaaggnnnnnnngaaaggatacaaacatgtaaatatattgaaaaaattagggttatgaaaatattacc 110  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4685584 atgaagatatagtggacgagtaacaaatttatcaaggaaaaaaagaaaggatacaaacatgtaaatatattgaaaaaattagggttatgaaaatattacc 4685485  T
Q  111 aattttttgtgggagagcaatccagttaccaccagtaccatgttgttctatgtaagatttgagtttagaatcttcttctggagaccatggacctttcttc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4685484 aattttttgtgggagagcaatccagttaccaccagtaccatgttgttctatgtaagatttgagtttagaatcttcttctggagaccatggacctttcttc 4685385  T
Q  211 acgtttgctttgtcacaacaaggagctctacccatgtttgt 251  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4685384 acgtttgctttgtcacaacaaggagctctacccatgtttgt 4685344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 4612023 - 4612089
Alignment:
Q  180 atcttcttctggagaccatggacctttcttcacgtttgctttgtcacaacaaggagctctacccatg 246  Q
    |||||| || ||||||||||| ||| |||| || ||| |||||||||||||||||||||| ||||||    
T  4612023 atcttcatcaggagaccatggtcctctcttaactttttctttgtcacaacaaggagctcttcccatg 4612089  T

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Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 124 - 251
Target Start/End: Complemental strand, 5113289 - 5113162
Alignment:
Q  124 agagcaatccagttaccaccagtaccatgttgttctatgtaagatttgagtttagaatcttcttctggagaccatggacctttcttcacgtttgctttgt 223  Q
    ||||||||||| || ||||||||||||| ||||||||||||||| |||||||||| ||||||||| || |||||||||||||| || || || |||||||    
T  5113289 agagcaatccaatttccaccagtaccattttgttctatgtaagacttgagtttagcatcttcttcaggtgaccatggaccttttttgacattggctttgt 5113190  T
Q  224 cacaacaaggagctctacccatgtttgt 251  Q
    |||| ||||||||||| |||||||||||    
T  5113189 cacagcaaggagctcttcccatgtttgt 5113162  T

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Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 106 - 245
Target Start/End: Complemental strand, 53557141 - 53557002
Alignment:
Q  106 ttaccaattttttgtgggagagcaatccagttaccaccagtaccatgttgttctatgtaagatttgagtttagaatcttcttctggagaccatggacctt 205  Q
    |||||||||||||| || ||||||||||| || || ||||| |||| |  ||| ||||||||||||||| ||| ||||||||| |||||||| || ||||    
T  53557141 ttaccaattttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctt 53557042  T
Q  206 tcttcacgtttgctttgtcacaacaaggagctctacccat 245  Q
    |||||||||| || |||||||| || ||||||||||||||    
T  53557041 tcttcacgttagccttgtcacagcatggagctctacccat 53557002  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 130 - 248
Target Start/End: Original strand, 40254566 - 40254684
Alignment:
Q  130 atccagttaccaccagtaccatgttgttctatgtaagatttgagtttagaatcttcttctggagaccatggacctttcttcacgtttgctttgtcacaac 229  Q
    |||||||||||||| |||||||||||||  || |||| ||||||||| || |||||||| || |||||||||||| |||| || || |||||||||||||    
T  40254566 atccagttaccacctgtaccatgttgttgaatataagctttgagtttggagtcttcttcaggtgaccatggacctctcttgacattggctttgtcacaac 40254665  T
Q  230 aaggagctctacccatgtt 248  Q
    |||||||||| ||||||||    
T  40254666 aaggagctctccccatgtt 40254684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 124 - 245
Target Start/End: Complemental strand, 21173623 - 21173502
Alignment:
Q  124 agagcaatccagttaccaccagtaccatgttgttctatgtaagatttgagtttagaatcttcttctggagaccatggacctttcttcacgtttgctttgt 223  Q
    |||| |||||| || |||||||| |||||||  |||||||||  ||| || || |||||||||||||| |||||||||||| |||| ||  ||| |||||    
T  21173623 agagaaatccaatttccaccagtgccatgtttctctatgtaatctttaagctttgaatcttcttctggtgaccatggacctctcttaacacttgttttgt 21173524  T
Q  224 cacaacaaggagctctacccat 245  Q
    ||||||| |||||||| |||||    
T  21173523 cacaacatggagctcttcccat 21173502  T

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Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 114 - 245
Target Start/End: Original strand, 40820104 - 40820235
Alignment:
Q  114 tttttgtgggagagcaatccagttaccaccagtaccatgttgttctatgtaagatttgagtttagaatcttcttctggagaccatggacctttcttcacg 213  Q
    |||||| || |||| |||||| || |||||||| ||||| | |||||| ||   |||||| || | |||||||||||| |||||||| |||||||||||     
T  40820104 tttttgaggaagagaaatccaatttccaccagttccatgcttttctatatactctttgagctttgtatcttcttctggtgaccatggtcctttcttcaca 40820203  T
Q  214 tttgctttgtcacaacaaggagctctacccat 245  Q
    |||||||||||||| ||||||||||| |||||    
T  40820204 tttgctttgtcacagcaaggagctcttcccat 40820235  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 107 - 233
Target Start/End: Original strand, 47846978 - 47847104
Alignment:
Q  107 taccaattttttgtgggagagcaatccagttaccaccagtaccatgttgttctatgtaagatttgagtttagaatcttcttctggagaccatggaccttt 206  Q
    ||||||| |||||||| | ||  |||||||||||||| || ||||| | ||  ||||| |||||||| ||   |||||||||||| ||||| || |||||    
T  47846978 taccaatcttttgtggcaaagtgatccagttaccaccggttccatgctcttggatgtaggatttgagcttgtcatcttcttctggtgaccaaggtccttt 47847077  T
Q  207 cttcacgtttgctttgtcacaacaagg 233  Q
    ||||||||||||||||||||| |||||    
T  47847078 cttcacgtttgctttgtcacagcaagg 47847104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 108 - 245
Target Start/End: Original strand, 41208777 - 41208914
Alignment:
Q  108 accaattttttgtgggagagcaatccagttaccaccagtaccatgttgttctatgtaagatttgagtttagaatcttcttctggagaccatggacctttc 207  Q
    ||||| ||||| ||| |||| ||||||||| || ||||| |||||||  ||||||||    || ||||| | ||||||||| ||||||||||||||||||    
T  41208777 accaactttttttggcagagtaatccagtttcctccagttccatgtttctctatgtattcctttagttttgcatcttcttcaggagaccatggacctttc 41208876  T
Q  208 ttcacgtttgctttgtcacaacaaggagctctacccat 245  Q
    || || || ||||||||||| ||||||| ||| |||||    
T  41208877 tttacattagctttgtcacagcaaggagatcttcccat 41208914  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 34357224 - 34357170
Alignment:
Q  192 agaccatggacctttcttcacgtttgctttgtcacaacaaggagctctacccatg 246  Q
    ||||||||||||| | ||||| |||| |||||||||||| ||||| |||||||||    
T  34357224 agaccatggacctcttttcacttttgatttgtcacaacatggagccctacccatg 34357170  T

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