View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18380_high_1 (Length: 679)
Name: NF18380_high_1
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18380_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 616; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 20 - 663
Target Start/End: Original strand, 28079730 - 28080373
Alignment:
| Q |
20 |
aaacaatatgaataacatctgggacgacaactcctccgtcatggaagctttcatgaccacctccgacatctctagtttctggcttccaacaccacattcc |
119 |
Q |
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| T |
28079730 |
aaacaatatgaataacatctgggacgacaactcctccgtcatggaagctttcatgaccacctccgacatctctagtttctggcttccaacaccacattcc |
28079829 |
T |
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| Q |
120 |
gccacttcaaccactgctgcaccagtgcctcctccaccacaacagtctctattcaatcaagagactctccagcaccgtcttcaagctcttatcgaaggag |
219 |
Q |
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| T |
28079830 |
gccacttcaaccactgctgcaccagtgcctcctccaccacaacagtctctattcaatcaagagactctccagcaccgtcttcaagctcttatcgaaggag |
28079929 |
T |
|
| Q |
220 |
ccaaagaaagctggacctacgcgattttctggcaatcttcttacgactacaacatggctacaccgctactcggctggggtgatggatattacaaagggga |
319 |
Q |
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| T |
28079930 |
cgaaagaaagctggacctacgcgattttctggcaatcttcttacgactacaccatggctacacctctactcggctggggtgatggatattacaaaggaga |
28080029 |
T |
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| Q |
320 |
agatgacaaagtaaaattgaaacgagttacacctccggaagaacaggctcatcgtagaaagattctccgtgagcttaatacgttaatttctggtggttcg |
419 |
Q |
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| T |
28080030 |
agatgacaaagtaaaattgaaacgagttacacctccggaagaacaggctcatcgtagaaagattctccgtgagcttaatacgttaatttctggtggttca |
28080129 |
T |
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| Q |
420 |
tctgtctcagatgatgccgttgaggaagatgtcaccgacactgagtggttttttctcacgtcgatgactcaatcctttgtcaacggcaccggatcactga |
519 |
Q |
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| T |
28080130 |
tctgtctctgatgatgccgttgaggaagatgtcaccgacactgagtggttttttctcacgtcgatgactcaatcctttgtcaacggcaccggatcactga |
28080229 |
T |
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| Q |
520 |
gtcaggcttatttcaattcaaccccggtgtggatcaccggggctgagaggctttccggttcagcatgtgaacgggcccgtgaagcacgggtccatgggtt |
619 |
Q |
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| T |
28080230 |
gtcaggcttatttcaattcaaccccggtgtggatcaccggggctgagaggctttccggttcaccatgtgaacgggcccgtgaagcacgggtccatgggtt |
28080329 |
T |
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| Q |
620 |
tcagaccttggtatgtataccaacttcttcaagtggggtggttg |
663 |
Q |
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| T |
28080330 |
tcagaccttggtatgtataccaacttcttcaagtggggtggttg |
28080373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 12884546 - 12884644
Alignment:
| Q |
170 |
attcaatcaagagactctccagcaccgtcttcaagctcttatcgaaggagccaaagaaagctggacctacgcgattttctggcaatcttcttacgacta |
268 |
Q |
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| T |
12884546 |
attcaaccaagacactctccaacaacgtcttcaggctttaatcgaaggtgcaaaagaaatctggacctacgctattttctggcaaccttcttacgacta |
12884644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 12836517 - 12836615
Alignment:
| Q |
170 |
attcaatcaagagactctccagcaccgtcttcaagctcttatcgaaggagccaaagaaagctggacctacgcgattttctggcaatcttcttacgacta |
268 |
Q |
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| T |
12836517 |
attcaaccaagacactctccaacaacgtcttcaagctttaattgaaggcgtaaaagaaatctggacctacgctatcttctggcaaccttcttatgacta |
12836615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 12868357 - 12868455
Alignment:
| Q |
170 |
attcaatcaagagactctccagcaccgtcttcaagctcttatcgaaggagccaaagaaagctggacctacgcgattttctggcaatcttcttacgacta |
268 |
Q |
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| T |
12868357 |
attcaaccaagacactctccaacaacgtcttcaagctttaattgaaggcgtaaaagaaatctggacctacgctatcttctggcaaccttcttatgacta |
12868455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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