View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18380_high_10 (Length: 482)
Name: NF18380_high_10
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18380_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 17 - 477
Target Start/End: Original strand, 825748 - 826208
Alignment:
| Q |
17 |
ctagttttatttagaacataatctacaggtatattttaattgttaatgaaaacttcaactttaacaacatacctgtaatgtcaatcttatgcgaaattcc |
116 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
825748 |
ctagttttatttataacataatctacaggtatattttgattgttaatgaaaacttcaactttaacaacatacctgtaatgtcaatcttatgcgaaattcc |
825847 |
T |
|
| Q |
117 |
agcagcagtcaacgacttagaaattaatttggcaacctcttcaaacttctggttttgaaccagaggaaaaactgtgcacttaataggagccacaagtgaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
825848 |
agcagcagtcaacgacttagaaattaatttggcaacctcttcaaacttctggttttgaaccagaggaaaaactgtgcacttaataggagccacaagtgaa |
825947 |
T |
|
| Q |
217 |
ggaaagcggaatacatttaactgttcatccccagttttactctgccttgtatagaaagtgtgctcaaatagacaatatattatccgtccaatcccaaagg |
316 |
Q |
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| T |
825948 |
ggaaagcggaatacatttaactgttcatccccagctttactctgccttgtatagaaagtgtgctcaaatagacaatatattatccgtccaatcccaaagg |
826047 |
T |
|
| Q |
317 |
atggttcaatcacagatggtgtaaaaactcgctgatgctctttctttttctccttgtgaatgctcaccatgctcttattaatagttacagttttcccaag |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
826048 |
atggttcaatcacagatggtgtaaaaactcgctgatgctctttctttttctccatgtgaatgctcaccatgctcttattaatagttacagtttccccaag |
826147 |
T |
|
| Q |
417 |
cgtacacacttcaaactcaacctcaccttttgattccagagcggccttcatatcctatgct |
477 |
Q |
| |
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| T |
826148 |
cgtacacacttcaaactcaacctcaccttttgattccagagcggccttcatatccaatgct |
826208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 73 - 477
Target Start/End: Original strand, 832475 - 832879
Alignment:
| Q |
73 |
aactttaacaacatacctgtaatgtcaatcttatgcgaaattccagcagcagtcaacgacttagaaattaatttggcaacctcttcaaacttctggtttt |
172 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||| |
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| T |
832475 |
aactttaacaacatacctgtaatgtcaatcatatgccaaattccagcagcagtcaacgactcggaaattagattggcaacctcttcaaactcctggtttt |
832574 |
T |
|
| Q |
173 |
gaaccagaggaaaaactgtgcacttaataggagccacaagtgaaggaaagcggaatacatttaactgttcatccccagttttactctgccttgtatagaa |
272 |
Q |
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||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
832575 |
taaccagagggaaaacagtgcacttaataggagccacaagtgaaggaaagcgaaatacatttaactgttcatccccagcttcactctgccttgtatagaa |
832674 |
T |
|
| Q |
273 |
agtgtgctcaaatagacaatatattatccgtccaatcccaaaggatggttcaatcacagatggtgtaaaaactcgctgatgctctttctttttctccttg |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
832675 |
agtgtgctcaaatagacaatatattatccgtccaatcccaaaggatggttcaatcacagatggtgtaaaaactcgctgatgctctttctttttctccgtg |
832774 |
T |
|
| Q |
373 |
tgaatgctcaccatgctcttattaatagttacagttttcccaagcgtacacacttcaaactcaacctcaccttttgattccagagcggccttcatatcct |
472 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
832775 |
tgaatgctcaccatgctcttattaatagttacagttttcccaagcgtacacacttcaaattcaacctcaccttttgattccagagcggccttcatatcca |
832874 |
T |
|
| Q |
473 |
atgct |
477 |
Q |
| |
|
||||| |
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|
| T |
832875 |
atgct |
832879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 477
Target Start/End: Original strand, 937949 - 938404
Alignment:
| Q |
19 |
agttttatttagaacataatctacaggtatattttaattgttaatgaaaacttcaactttaacaacatacctgtaatgtcaatcttatgcgaaattccag |
118 |
Q |
| |
|
||||||||||| |||||||| |||||||||| | || ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
937949 |
agttttattta--acataatcgacaggtatatctacat-gttaacgagaacttcaactttaacaacatacctgtaatgtcaatcttatgcgaaattccag |
938045 |
T |
|
| Q |
119 |
cagcagtcaacgacttagaaattaatttggcaacctcttcaaacttctggttttgaaccagaggaaaaactgtgcacttaataggagccacaagtgaagg |
218 |
Q |
| |
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|||||||||||||||| ||||| ||||||||||| |||||| ||||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||| |
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| T |
938046 |
cagcagtcaacgacttggaaatcaatttggcaacatcttcatacttctgattttgaaccagagggaaaactgtgcatttaataggagccacaagagaagg |
938145 |
T |
|
| Q |
219 |
aaagcggaatacatttaactgttcatccccagttttactctgccttgtatagaaagtgtgctcaaatagacaatatattatccgtccaatcccaaaggat |
318 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||| |
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| T |
938146 |
aaagcgaaatacatttaactgttcatccccagctttactcgaccttgtatagaaagtatgctcatataggcaatatattatccgtccaatcccaaaggat |
938245 |
T |
|
| Q |
319 |
ggttcaatcacagatggtgtaaaaactcgctgatgctctttctttttctccttgtgaatgctcaccatgctcttattaatagttacagttttcccaagcg |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| | |
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| T |
938246 |
ggttcaatcacagatggtgtaaaaactcgctgatgctctttctttatctccttgtgaatggtcaccatattcttattaatagttacagttttcccaagtg |
938345 |
T |
|
| Q |
419 |
tacacacttcaaactcaacctcaccttttgattccagagcggccttcatatcctatgct |
477 |
Q |
| |
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|||| ||||||||||||||||| |||||||| |||||||| |||||||||||| ||||| |
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|
| T |
938346 |
tacatacttcaaactcaacctcgccttttgagtccagagcagccttcatatccaatgct |
938404 |
T |
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