View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18380_high_12 (Length: 454)
Name: NF18380_high_12
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18380_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 2288501 - 2288711
Alignment:
| Q |
1 |
tccttgttactggagtgggagaggattatactcactcatattcatctcacaactcaccatttaaggggatagtaatttgttattaacaaatgttagtgag |
100 |
Q |
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| T |
2288501 |
tccttgttactggagtgggagaggataatacacactcatattcatctcacaactcaccatttaaggggatagtaatttgttattaacaaatgttagtgag |
2288600 |
T |
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| Q |
101 |
agatttgttcttataaatctccaacccctgtgcctcactctcaacccactttatttctccagaaatataacatataactacataagataggttcaatgat |
200 |
Q |
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| T |
2288601 |
agatttgttcttctaaatctccaatccccgtgcctcactctcaacccactttatttctccagaaatataacatataactacataagataggttcaatgat |
2288700 |
T |
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| Q |
201 |
attctactata |
211 |
Q |
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| T |
2288701 |
agtctactata |
2288711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 209 - 437
Target Start/End: Original strand, 2288682 - 2288913
Alignment:
| Q |
209 |
ataagataggttcaatgatagtctactatatatttgattgtttccattgggattagtgaatattaggaatcacaagtgtagcaaccgtatcatatccagt |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2288682 |
ataagataggttcaatgatagtctactatatatttgattgtttccattgagattagtgaatattaggaatcacaagtgtaggaaccgtatcatatccagt |
2288781 |
T |
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| Q |
309 |
nnnnnnnnnnnnn-tagcgtatcacatgagagattgaattattacaattcttcttaaaagaacctggtttgaacaataatgatacttcatgaaa--atga |
405 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2288782 |
aaaaaaaaaaaaagtagtgtatcacatgagagattgaattattacaattcttcttaaaagaacctggtttgaacaataatgatacttcatgaaaatatga |
2288881 |
T |
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| Q |
406 |
gttgaattataaaaaatatggaattttccagg |
437 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
2288882 |
gttgaattataaaaaatatggaattttccagg |
2288913 |
T |
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