View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18380_high_15 (Length: 426)
Name: NF18380_high_15
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18380_high_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 156 - 408
Target Start/End: Complemental strand, 45121999 - 45121747
Alignment:
| Q |
156 |
ttataagcccaacattttttacccttgatcattcttatatacattgcatgttatatgacattgtaattaaacgtattaaaatataaaagataataaaccc |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45121999 |
ttataagcccaacattttttacccttgatcattcttatatacattgcatgttatatgacattgtaattaaacgtattaaaatataaaagataataaaccc |
45121900 |
T |
|
| Q |
256 |
gacatatttcaagaacaattgaattaaattacataactacttctcataccataaagaagaatcaagaaccgaagccgcccagttcacatagcctttgatg |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45121899 |
gacatatttcaagaacaattgaattaaattacataactgcttctcataccataaagaagaatcaagaaccgaagccgcccagttcacatagcctttgatg |
45121800 |
T |
|
| Q |
356 |
gctaagcaaccctcaacatccttaatgtcaaacttcattttcagtgatctaca |
408 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45121799 |
gctaagaaaccctcaacatccttaatgtcaaacttcattttcagtgatctaca |
45121747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 45122273 - 45122166
Alignment:
| Q |
11 |
agtgagaagaacttagtattgatttataatatcaacactcgggcacttgaatattgctcaaaaagaatgttagtgtagagattttattaccgagtaaaaa |
110 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
45122273 |
agtgagaagaacttagcattgatttataatatcaacactcggccacttgaatattgctcaaaaagaatgttagtgtagagattttattactgagtaaaaa |
45122174 |
T |
|
| Q |
111 |
atatgtat |
118 |
Q |
| |
|
|||||||| |
|
|
| T |
45122173 |
atatgtat |
45122166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 45122085 - 45122028
Alignment:
| Q |
104 |
gtaaaaaatatgtattcagtgtctgatgcaaaaactatttatactatattttttataa |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45122085 |
gtaaaaaatatgtattcagtgtctgatgcaaaaactatttatactatattttttataa |
45122028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 45122693 - 45122628
Alignment:
| Q |
186 |
attcttatatacattgcatgttatatgacattgtaattaaacgtattaaaatataaaagataataa |
251 |
Q |
| |
|
|||||||||||||| ||||||||||||||| || ||||||| ||||| |||||||||||||||||| |
|
|
| T |
45122693 |
attcttatatacatcgcatgttatatgacaatgcaattaaatgtattgaaatataaaagataataa |
45122628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 45122750 - 45122692
Alignment:
| Q |
179 |
cttgatcattcttatatacattgcatgttatatgacattgtaattaaacgtattaaaat |
237 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||| ||||||| ||||| |||| |
|
|
| T |
45122750 |
cttgatcattcttatatactttgcatgttttatgacattgcaattaaatgtattgaaat |
45122692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University