View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18380_high_18 (Length: 381)
Name: NF18380_high_18
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18380_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 372
Target Start/End: Complemental strand, 9476987 - 9476643
Alignment:
| Q |
19 |
tgtgtaaattaacaacacacatataatattaattaataagtttgcaccccctgacccaaaattctggatattccactgatcaatgacccgtaaaatatgg |
118 |
Q |
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| T |
9476987 |
tgtgtaaattaacaacacacatataat------taataagtatgcaccccctgacccaaggttctggataccccaccgatcaatgatccatgaaatgtgg |
9476894 |
T |
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| Q |
119 |
tcatcaatatattcatataataatctctatgctttagtgtcatcctacttcacaataaaatttgactatcgacactataagaataatagtcgtgtataat |
218 |
Q |
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| T |
9476893 |
tcatcaatatattcatataatagtctttatgttttagtgtcattccacttcacaataaaatttgactatcgatattttaagaataattgtcgtgtataat |
9476794 |
T |
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| Q |
219 |
agtcatgcattatttataaatacaatagtagtattgtttaccaaaataagaaaaagaaacacaagaatatattgaatagtcgtgtaagtatcattttaca |
318 |
Q |
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| T |
9476793 |
agtcgtacattatttaaaaatacaatagtagtattgtttaccaaaataagaaaaagaaacgcaaga--atattgaatagtcgtgtaagtatcattttaca |
9476696 |
T |
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| Q |
319 |
cttaggaatatactgagattatccctttagaattattcccaagaataatctacc |
372 |
Q |
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| T |
9476695 |
cttaggaatatactgagattatccc-ttagaattattcccaagaataagctacc |
9476643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 18807051 - 18807121
Alignment:
| Q |
135 |
ataataatctctatgctttagtgtcatcctacttcacaataaaatttgactatcgacactataagaataat |
205 |
Q |
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| T |
18807051 |
ataatagtctctatgctttattgttatcttacttcacaataacgcttgactatagatactttaagaataat |
18807121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 19388596 - 19388544
Alignment:
| Q |
101 |
atgacccgtaaaatatggtcatcaatatattcatataataatctctatgcttt |
153 |
Q |
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| T |
19388596 |
atgacccgtgagatatggtcatcaatctatatacataataatctctatgcttt |
19388544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 32056917 - 32056985
Alignment:
| Q |
135 |
ataataatctctatgctttagtgtcatcctacttcacaataaaatttgactatcgacactataagaata |
203 |
Q |
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| T |
32056917 |
ataatagtctctatgctttaatgatatcccacttctcaataaagtttgactacggacactttaagaata |
32056985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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