View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18380_high_19 (Length: 376)
Name: NF18380_high_19
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18380_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 20 - 367
Target Start/End: Complemental strand, 43096592 - 43096245
Alignment:
| Q |
20 |
tatgcaccaattaatgttaatatctatttgctccctccatttttcactttcacttcagggatagtagcagcaacatttttattagaattcattcccatct |
119 |
Q |
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| T |
43096592 |
tatgcaccaattaatgttgatatctatttgctccctccatttttcactttcacttcagggatagtagcagcaacatttttattagaattcattcccatct |
43096493 |
T |
|
| Q |
120 |
tagttggaatagagtgccttctagaaccagatgaagaagttgtgaaagaaagctgcttctttacagaaggactttgcacgttagatttaacctttgaaaa |
219 |
Q |
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| T |
43096492 |
tagttggaatagagtgccttctagaaccagatgaagaagctgtgaaagaaagctgcttctttacagaaggactttgcacgttagatttaacctttgaaaa |
43096393 |
T |
|
| Q |
220 |
ttttgcaggtgtgtttacaagactttcatcctctttcaccggagacaccgcaatgctatgacgacgattactttcggaatttttgttgaatgtgaatttt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43096392 |
ttttgcaggtgtgtttacaagactttcatcctctttcaccggagccaccgcaatgctatgacgacgattactttcggaatttttgttgaatgtgaatttt |
43096293 |
T |
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| Q |
320 |
gagtcaccatcaccaccccaagaaccaactcttggacttgatgatgtc |
367 |
Q |
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| T |
43096292 |
gagtcaccatcaccaccccaagaaccaactcttggacttgatgatgtc |
43096245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 260 - 367
Target Start/End: Original strand, 32726597 - 32726704
Alignment:
| Q |
260 |
ggagacaccgcaatgctatgacgacgattactttcggaatttttgttgaatgtgaattttgagtcaccatcaccaccccaagaaccaactcttggacttg |
359 |
Q |
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|||||||||||||||||||||||||||| |||||||| | ||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
32726597 |
ggagacaccgcaatgctatgacgacgatcactttcggtaattttgttgaatgtgatttttgtgtcaccatcaccaccccaagaaccaactctttgacttg |
32726696 |
T |
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| Q |
360 |
atgatgtc |
367 |
Q |
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|||||||| |
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| T |
32726697 |
atgatgtc |
32726704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 256 - 367
Target Start/End: Original strand, 44187457 - 44187561
Alignment:
| Q |
256 |
caccggagacaccgcaatgctatgacgacgattactttcggaatttttgttgaatgtgaattttgagtcaccatcaccaccccaagaaccaactcttgga |
355 |
Q |
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||||||||||||||||||||||||||||| || |||||||| | |||||||||||| ||||||||||||||||||||||||||||||| || || |
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| T |
44187457 |
caccggagacaccgcaatgctatgacgacaatcactttcggtaattttgttgaatg-------tgagtcaccatcaccaccccaagaaccaactttttga |
44187549 |
T |
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| Q |
356 |
cttgatgatgtc |
367 |
Q |
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|||||||||||| |
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| T |
44187550 |
cttgatgatgtc |
44187561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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