View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18380_high_2 (Length: 599)

Name: NF18380_high_2
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18380_high_2
NF18380_high_2
[»] chr8 (16 HSPs)
chr8 (20-547)||(25488987-25489515)
chr8 (251-544)||(25385112-25385413)
chr8 (23-150)||(24913783-24913915)
chr8 (20-150)||(25646202-25646337)
chr8 (175-446)||(25603162-25603442)
chr8 (20-115)||(25603826-25603922)
chr8 (472-547)||(25603027-25603102)
chr8 (474-547)||(25799402-25799475)
chr8 (350-432)||(25799465-25799547)
chr8 (307-367)||(25321366-25321426)
chr8 (20-88)||(25799543-25799611)
chr8 (42-137)||(25569119-25569214)
chr8 (20-61)||(25321934-25321975)
chr8 (76-121)||(25321889-25321934)
chr8 (20-50)||(25694637-25694667)
chr8 (149-177)||(25385414-25385442)
[»] scaffold0070 (5 HSPs)
scaffold0070 (23-150)||(17826-17951)
scaffold0070 (464-547)||(18540-18623)
scaffold0070 (474-547)||(38146-38219)
scaffold0070 (307-389)||(18458-18539)
scaffold0070 (149-177)||(18361-18389)
[»] scaffold0526 (1 HSPs)
scaffold0526 (102-147)||(11146-11191)
[»] chr3 (1 HSPs)
chr3 (102-147)||(11971234-11971279)


Alignment Details
Target: chr8 (Bit Score: 461; Significance: 0; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 20 - 547
Target Start/End: Complemental strand, 25489515 - 25488987
Alignment:
Q  20 gtcttgactcattgtgtaagaatgggaagaaaatatcttctattactgaactttccaatcagtttttggttgaatatttctgtcttttatgtcatatcag 119  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  25489515 gtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactttctaatcagtttttgattgaatatttctgtcttttatgtcatatcag 25489416  T
Q  120 gtggtgtctacttactaggttgctacataatcttgtgtcaaaagtacaaaaatatattgtttgcccgaaatcaacaagcaaaaaagatgtttnnnnnnnn 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||            
T  25489415 gtggtgtctacttactaggttgctacataatcttgtgtcaaaagtacaaaaatatattgtttgcacgaaatcaacaagcaaaaaagatgtttaaaaaaaa 25489316  T
Q  220 -caattgcttccagtaattaaactctttgatgatatatcatgaatagttgttgctgcttttgtctcttgacatcttttacaaaaattcacaaataaaaag 318  Q
     ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25489315 acaattgcttccagtaattaaactatttgatgatatatcatgaatagttgttgctgcttttgtctcttgacatcttttacaaaaattcacaaataaaaag 25489216  T
Q  319 taaatttcaaatgcatgttggtccattcacctttggacgattctagtttctacataattgctggtttttcagttttggctgagaatttatcttaaaatct 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25489215 taaatttcaaatgcatgttggtccattcacctttggacgattctagtttctacataattgctggtttttcagttttggctgagaatttatcttaaaatct 25489116  T
Q  419 gtttgatgagacaagaacagtataagttactatttaagaggtaagaactatagtaagatgagacaaaggatttatttttattcttggttataagaaaact 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25489115 gtttgatgagacaagaacagtataagttactatttaagaggtaagaactatagtaagatgagacaaaggatttattttgattcttggttataagaaaact 25489016  T
Q  519 ggcttttgcattaaacaattcctcatatg 547  Q
    |  ||||||||||||||||||||||||||    
T  25489015 gagttttgcattaaacaattcctcatatg 25488987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 251 - 544
Target Start/End: Complemental strand, 25385413 - 25385112
Alignment:
Q  251 atatatcatgaatagttgttgctgcttttgtctcttgaca--tcttttacaaaaattcacaaataaaaagtaaatttcaaatgcatgttggtccattcac 348  Q
    |||||||||| || ||||||||||| |||||||| ||| |  | ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||    
T  25385413 atatatcatgcattgttgttgctgcctttgtctc-tgaaattttttttacaaaaattcacaaagaaaaactaaatttcaaatgcatggtggtccattcac 25385315  T
Q  349 ctttggacgattctagtttctacataattgctggtttttcagttttggctgagaatttatcttaaaatctgtttgatgagacaagaacagtataagttac 448  Q
    ||||||| |||||| |||| | ||||||| ||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  25385314 ctttggatgattctggtttttgcataattactgattttacagttttggctaagaatttatcttaaaatctgtttgatgagacaagaacagtataagtttc 25385215  T
Q  449 tatttaagag-------gtaagaactatagtaagatgagacaaaggatttatttttattcttggttataagaaaactggcttttgcattaaacaattcct 541  Q
    ||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  25385214 tatttaagagataatatataagaactatagtaagatgagacaaaggatttatttttattcttggttataagaaaactgagttttgcattaaacaattcct 25385115  T
Q  542 cat 544  Q
    |||    
T  25385114 cat 25385112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 23 - 150
Target Start/End: Original strand, 24913783 - 24913915
Alignment:
Q  23 ttgactcattgtgtaagaatgggaagaaaatatcttctattactgaactttccaatcagtttttggttgaatatttctgtcttttatgtcatatcaggtg 122  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||    
T  24913783 ttgactcattgtgtaagaatgggaagaaaagatcttctattactgaactttctaatcagtttttggttgaatatttctgtcttttatgttatagcaggtg 24913882  T
Q  123 gt-----gtctacttactaggttgctacataat 150  Q
    ||     ||||||||||||||||||||||||||    
T  24913883 gtgtctagtctacttactaggttgctacataat 24913915  T

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Target: chr8; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 25646337 - 25646202
Alignment:
Q  20 gtcttgactcattgtgtaagaatgggaagaaaatatcttctattactgaactttccaatcagtttttggttgaatatttctgtcttttatgtcatatcag 119  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||| ||| |||    
T  25646337 gtcttgactcattgtgtaagaatgggaagaaaagatcttctattactgaaccttctaatcagtttttagttgaatatttctgtcttttatgttatagcag 25646238  T
Q  120 gtggtg-----tctacttactaggttgctacataat 150  Q
    ||||||     |||||||||||||||||||||||||    
T  25646237 gtggtgtctagtctacttactaggttgctacataat 25646202  T

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Target: chr8; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 175 - 446
Target Start/End: Complemental strand, 25603442 - 25603162
Alignment:
Q  175 attgtttgcccgaaatcaacaagcaaaaaagatgtttnnnnnnnncaattgcttccagtaattaaactctttgatgatatatcatgaatagttgttgctg 274  Q
    ||||||| ||| ||||||||||||||||  ||||||         ||||| |||| ||||||||||||||  |||||||||||||| || |||||| | |    
T  25603442 attgttttcccaaaatcaacaagcaaaatggatgttagaaaaaaacaatttcttctagtaattaaactctaagatgatatatcatgcattgttgttccgg 25603343  T
Q  275 cttttgtctcttgacatcttttacaaaaattcacaaataaaa----------agtaaatttcaaatgcatgttggtccattcacctttggacgattctag 364  Q
    | ||||||||  |||||| ||||||||||||| | ||||||           | |||||||  ||||||| |||||||||||||| |||||| |||||||    
T  25603342 cctttgtctcc-gacatcgtttacaaaaattcgctaataaatgtccaaattcactaaatttgtaatgcatattggtccattcaccattggactattctag 25603244  T
Q  365 tttctacataattgctggtttttcagttttggctgagaatttatcttaaaatctgtttgatgagacaagaacagtataagtt 446  Q
    ||||| ||||||||| |||||||||||||||| |||||||| ||||||||||  ||||||||| |||||||  |||||||||    
T  25603243 tttctgcataattgcaggtttttcagttttggttgagaattcatcttaaaattggtttgatgaaacaagaattgtataagtt 25603162  T

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Target: chr8; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 25603922 - 25603826
Alignment:
Q  20 gtcttgactcattgtgtaagaatgggaagaaaatatcttctattactgaactttccaatcagt-ttttggttgaatatttctgtcttttatgtcata 115  Q
    |||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||||| ||||| |||||||    
T  25603922 gtcttgactcattgtgtacgaatgggaagaaaagatcttatattactgaactttctaatcagttttttggttgaatatttctgccttttttgtcata 25603826  T

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Target: chr8; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 472 - 547
Target Start/End: Complemental strand, 25603102 - 25603027
Alignment:
Q  472 taagatgagacaaaggatttatttttattcttggttataagaaaactggcttttgcattaaacaattcctcatatg 547  Q
    |||||||||| |||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||    
T  25603102 taagatgagagaaaggatttatttttattcttggttgcaagaatactggcttttgcattaaacaattcctcatatg 25603027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 474 - 547
Target Start/End: Complemental strand, 25799475 - 25799402
Alignment:
Q  474 agatgagacaaaggatttatttttattcttggttataagaaaactggcttttgcattaaacaattcctcatatg 547  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||| |||||||    
T  25799475 agatgagacaaaggatttatttttattcatggttataagaaaactgacttttgtattaaacaattcatcatatg 25799402  T

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Target: chr8; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 350 - 432
Target Start/End: Complemental strand, 25799547 - 25799465
Alignment:
Q  350 tttggacgattctagtttctacataattgctggtttttcagttttggctgagaatttatcttaaaatctgtttgatgagacaa 432  Q
    |||||| ||||||||||||| ||||||||||| |||||||||||| ||||||||| |||||||||||| ||| ||||||||||    
T  25799547 tttggatgattctagtttctgcataattgctgatttttcagtttttgctgagaatgtatcttaaaatcagttagatgagacaa 25799465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 307 - 367
Target Start/End: Complemental strand, 25321426 - 25321366
Alignment:
Q  307 acaaataaaaagtaaatttcaaatgcatgttggtccattcacctttggacgattctagttt 367  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25321426 acaaataaaaactaaatttcaaatgcatgttggtccattcacctttggatgattctagttt 25321366  T

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Target: chr8; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 25799611 - 25799543
Alignment:
Q  20 gtcttgactcattgtgtaagaatgggaagaaaatatcttctattactgaactttccaatcagtttttgg 88  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||    
T  25799611 gtcttgaatcattgtgtaagaatgggaagaaaagatcttctattactgaactttgtaatcagtttttgg 25799543  T

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Target: chr8; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 42 - 137
Target Start/End: Complemental strand, 25569214 - 25569119
Alignment:
Q  42 tgggaagaaaatatcttctattactgaactttccaatcagtttttggttgaatatttctgtcttttatgtcatatcaggtggtgtctacttactag 137  Q
    ||||| ||||| ||||||||||||||||||| | ||||| ||||| |||| |||||| | |||| | ||||||| ||||||||||||| |||||||    
T  25569214 tgggatgaaaagatcttctattactgaacttgctaatcatttttttgttgcatatttatttcttctctgtcataccaggtggtgtctagttactag 25569119  T

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Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 25321975 - 25321934
Alignment:
Q  20 gtcttgactcattgtgtaagaatgggaagaaaatatcttcta 61  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  25321975 gtcttgactcattgtgtaagaatgggaagaaaagatcttcta 25321934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 25321934 - 25321889
Alignment:
Q  76 aatcagtttttggttgaatatttctgtcttttatgtcatatcaggt 121  Q
    ||||||||||||||||||||| |||| ||||||||||||| |||||    
T  25321934 aatcagtttttggttgaatatatctgccttttatgtcatagcaggt 25321889  T

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Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 50
Target Start/End: Complemental strand, 25694667 - 25694637
Alignment:
Q  20 gtcttgactcattgtgtaagaatgggaagaa 50  Q
    |||||||||||||||||||||||||||||||    
T  25694667 gtcttgactcattgtgtaagaatgggaagaa 25694637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 149 - 177
Target Start/End: Complemental strand, 25385442 - 25385414
Alignment:
Q  149 atcttgtgtcaaaagtacaaaaatatatt 177  Q
    |||||||||||||||||||||||||||||    
T  25385442 atcttgtgtcaaaagtacaaaaatatatt 25385414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 89; Significance: 1e-42; HSPs: 5)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 23 - 150
Target Start/End: Original strand, 17826 - 17951
Alignment:
Q  23 ttgactcattgtgtaagaatgggaagaaaatatcttctattactgaactttccaatcagtttttggttgaatatttctgtcttttatgtcatatcaggtg 122  Q
    |||||||||||||||||||||||||||||| ||  ||||||||||||||||| ||||||||||||||| | ||||| |||||||||||| ||| ||||||    
T  17826 ttgactcattgtgtaagaatgggaagaaaagat--tctattactgaactttctaatcagtttttggttaattatttttgtcttttatgttatagcaggtg 17923  T
Q  123 gtgtctacttactaggttgctacataat 150  Q
    ||||||||||||||||||||||||||||    
T  17924 gtgtctacttactaggttgctacataat 17951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 464 - 547
Target Start/End: Original strand, 18540 - 18623
Alignment:
Q  464 aactatagtaagatgagacaaaggatttatttttattcttggttataagaaaactggcttttgcattaaacaattcctcatatg 547  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||    
T  18540 aactatagtaagatgagacaaaggatttatttttattcatggttataagaaaactggcttttgcattacacaattcttcatatg 18623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 474 - 547
Target Start/End: Original strand, 38146 - 38219
Alignment:
Q  474 agatgagacaaaggatttatttttattcttggttataagaaaactggcttttgcattaaacaattcctcatatg 547  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||    
T  38146 agatgagacaaaggatttatttttattcatggttataagaaaactgacttttgcattaaacaattcatcatatg 38219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 307 - 389
Target Start/End: Original strand, 18458 - 18539
Alignment:
Q  307 acaaataaaaagtaaatttcaaatgcatgttggtccattcacctttggacgattctagtttctacataattgctggtttttca 389  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| |||||| | ||||||||||| |||||||    
T  18458 acaaagaaaaactaaatttcaaatgcatgttggtccattcacctttggatgattttagttt-tgcataattgctgatttttca 18539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 149 - 177
Target Start/End: Original strand, 18361 - 18389
Alignment:
Q  149 atcttgtgtcaaaagtacaaaaatatatt 177  Q
    |||||||||||||||||||||||||||||    
T  18361 atcttgtgtcaaaagtacaaaaatatatt 18389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 11146 - 11191
Alignment:
Q  102 tcttttatgtcatatcaggtggtgtctacttactaggttgctacat 147  Q
    |||||| ||||||| || |||||||||||||||||| |||||||||    
T  11146 tcttttgtgtcataccatgtggtgtctacttactagtttgctacat 11191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 11971234 - 11971279
Alignment:
Q  102 tcttttatgtcatatcaggtggtgtctacttactaggttgctacat 147  Q
    |||||| ||||||| || |||||||||||||||||| |||||||||    
T  11971234 tcttttgtgtcataccatgtggtgtctacttactagtttgctacat 11971279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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