View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18380_high_23 (Length: 354)

Name: NF18380_high_23
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18380_high_23
NF18380_high_23
[»] chr7 (10 HSPs)
chr7 (19-340)||(30068058-30068379)
chr7 (19-340)||(45137730-45138051)
chr7 (58-337)||(42000780-42001059)
chr7 (209-250)||(45823701-45823742)
chr7 (209-325)||(14231802-14231918)
chr7 (178-298)||(34577174-34577294)
chr7 (209-325)||(26906848-26906964)
chr7 (195-301)||(44117774-44117880)
chr7 (273-337)||(9030538-9030602)
chr7 (203-247)||(48844486-48844530)
[»] chr3 (14 HSPs)
chr3 (19-340)||(18986232-18986553)
chr3 (41-340)||(52381802-52382101)
chr3 (34-325)||(29133283-29133574)
chr3 (34-325)||(53545261-53545552)
chr3 (147-265)||(20370777-20370895)
chr3 (209-298)||(925576-925665)
chr3 (213-298)||(44703191-44703276)
chr3 (209-325)||(37984675-37984791)
chr3 (219-325)||(24759079-24759185)
chr3 (219-325)||(24826829-24826935)
chr3 (219-325)||(33648438-33648544)
chr3 (209-250)||(12813319-12813360)
chr3 (90-174)||(21799890-21799974)
chr3 (209-325)||(53024974-53025090)
[»] scaffold0007 (1 HSPs)
scaffold0007 (22-192)||(78937-79107)
[»] chr4 (3 HSPs)
chr4 (58-337)||(11236485-11236764)
chr4 (213-298)||(5454064-5454149)
chr4 (124-184)||(38642808-38642868)
[»] scaffold0152 (1 HSPs)
scaffold0152 (178-294)||(13146-13262)
[»] chr1 (3 HSPs)
chr1 (108-247)||(21667597-21667736)
chr1 (29-130)||(39072524-39072625)
chr1 (213-247)||(38685381-38685415)
[»] chr8 (5 HSPs)
chr8 (48-174)||(40170578-40170704)
chr8 (54-174)||(23822923-23823043)
chr8 (210-328)||(35351121-35351239)
chr8 (72-160)||(33686217-33686305)
chr8 (126-238)||(43382534-43382646)
[»] chr5 (3 HSPs)
chr5 (108-173)||(16685136-16685201)
chr5 (51-325)||(30442819-30443092)
chr5 (213-298)||(43026684-43026769)
[»] chr6 (4 HSPs)
chr6 (147-298)||(2736609-2736760)
chr6 (209-325)||(31891563-31891679)
chr6 (182-328)||(22390028-22390174)
chr6 (209-298)||(25169483-25169572)


Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 340
Target Start/End: Complemental strand, 30068379 - 30068058
Alignment:
19 gtctggttcatcattacaaattgcgaaagacttccttatacaccacatttgatgtagtgctcatacaattgccatcttcatccgtgcataatatcttcaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30068379 gtctggttcatcattacaaattgcgaaagacttccttatacaccacatttgatgtagtgctcatacaattgccatcttcatccgtgcataatatcttcaa 30068280  T
119 tccgtttcttgatgtaactcttgacaccgcaacatatagttgtccgtgggaaaaaaccggttgaggaatgtatactccaacttctttcaatgattgccct 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
30068279 tccgtttcttgatgtaactcttgacaccgcaacatatagttgtccgtgggaaaaaaccggttgaggaaggtatactccaacttctttcaatgattgccct 30068180  T
219 tgacttttgttgatcgtcattgcaaatgacaccgatatagggaactgtcgacgctgaaacttgaatggaattcttgtatccgatggactcaacgacaatc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30068179 tgacttttgttgatcgtcattgcaaatgacaccgatatagggaactgtcgacgctgaaacttgaatggaattcttgtatccgatggactcaacgacaatc 30068080  T
319 tcggtatataaactatatctcc 340  Q
    ||||||||||||||||||||||    
30068079 tcggtatataaactatatctcc 30068058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 340
Target Start/End: Complemental strand, 45138051 - 45137730
Alignment:
19 gtctggttcatcattacaaattgcgaaagacttccttatacaccacatttgatgtagtgctcatacaattgccatcttcatccgtgcataatatcttcaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
45138051 gtctggttcatcattacaaattgcgaaagacttccttatacaccacatttgatgtagtgctcatacaattgccatcttcatccgtgcataatatcttcaa 45137952  T
119 tccgtttcttgatgtaactcttgacaccgcaacatatagttgtccgtgggaaaaaaccggttgaggaatgtatactccaacttctttcaatgattgccct 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
45137951 tccgtttcttgatgtaactcttgacaccgcaacatatagttgtccgtgggaaaaaaccggttgaggaaggtatactccaacttctttcaatgattgccct 45137852  T
219 tgacttttgttgatcgtcattgcaaatgacaccgatatagggaactgtcgacgctgaaacttgaatggaattcttgtatccgatggactcaacgacaatc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
45137851 tgacttttgttgatcgtcattgcaaatgacaccgatatagggaactgtcgacgctgaaacttgaatggaattcttgtatccgatggactcaacgacaatc 45137752  T
319 tcggtatataaactatatctcc 340  Q
    ||||||||||||||||||||||    
45137751 tcggtatataaactatatctcc 45137730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 58 - 337
Target Start/End: Original strand, 42000780 - 42001059
Alignment:
58 acaccacatttgatgtagtgctcatacaattgccatcttcatccgtgcataatatcttcaatccgtttcttgatgtaactcttgacaccgcaacatatag 157  Q
    |||| ||||||||||||||||| || |||||||  |||||||| ||  |||  |  |||||||| || |||||||| |||||||| |||||||||||||     
42000780 acacgacatttgatgtagtgctgatgcaattgctgtcttcatctgttaatagcaatttcaatcctttccttgatgttactcttgagaccgcaacatataa 42000879  T
158 ttgtccgtgggaaaaaaccggttgaggaatgtatactccaacttctttcaatgattgcccttgacttttgttgatcgtcattgcaaatgacaccgatata 257  Q
    ||| ||||| ||||| || |||||  ||| |||||  ||||||| ||  || || || ||||| || ||||| || ||||| || || || || || ||     
42000880 ttggccgtgtgaaaacacaggttgcagaaggtatatcccaactttttgtaaagactgtccttggctcttgtttatagtcatagcgaacgaaactgaaatt 42000979  T
258 gggaactgtcgacgctgaaacttgaatggaattcttgtatccgatggactcaacgacaatctcggtatataaactatatc 337  Q
    ||||| ||    || ||||||||||||||||| |||||||| || ||  |||| |||||||| || || || ||||||||    
42000980 gggaattgcttgcgttgaaacttgaatggaatccttgtatcagaaggtgtcaatgacaatctagggatgtatactatatc 42001059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 45823742 - 45823701
Alignment:
209 tgattgcccttgacttttgttgatcgtcattgcaaatgacac 250  Q
    |||||||||||||||||||||||| |||||||||||||||||    
45823742 tgattgcccttgacttttgttgatagtcattgcaaatgacac 45823701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 209 - 325
Target Start/End: Complemental strand, 14231918 - 14231802
Alignment:
209 tgattgcccttgacttttgttgatcgtcattgcaaatgacaccgatatagggaactgtcgacgctgaaacttgaatggaattcttgtatccgatggactc 308  Q
    |||||| || ||||||||||| || |||||||||||  |||  | |||||| |||||||  || ||||| ||||| |||||||| ||||| |||||  ||    
14231918 tgattgtccctgacttttgtttatagtcattgcaaaacacaaagctataggaaactgtctgcgttgaaatttgaaaggaattctggtatcagatggtgtc 14231819  T
309 aacgacaatctcggtat 325  Q
    || ||||||||||||||    
14231818 aatgacaatctcggtat 14231802  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 178 - 298
Target Start/End: Complemental strand, 34577294 - 34577174
Alignment:
178 gttgaggaatgtatactccaacttctttcaatgattgcccttgacttttgttgatcgtcattgcaaatgacaccgatatagggaactgtcgacgctgaaa 277  Q
    ||||||||| ||| ||  |||||||||| |||||||| |||||||| |||||||| |||||||||||  | || |||||||| ||||| | ||| || ||    
34577294 gttgaggaaggtagacatcaacttcttttaatgattgtccttgactcttgttgattgtcattgcaaaataaacagatataggaaactgcctacgttggaa 34577195  T
278 cttgaatggaattcttgtatc 298  Q
     ||||| || ||||| |||||    
34577194 tttgaacggtattctagtatc 34577174  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 325
Target Start/End: Original strand, 26906848 - 26906964
Alignment:
209 tgattgcccttgacttttgttgatcgtcattgcaaatgacaccgatatagggaactgtcgacgctgaaacttgaatggaattcttgtatccgatggactc 308  Q
    |||||| || |||||||| || || |||||||||||  |||  | |||||| |||||||  || ||||| ||||| |||||||| ||||| |||||  ||    
26906848 tgattgtccctgacttttatttatagtcattgcaaaacacaaagctataggaaactgtctgcgttgaaatttgaaaggaattctggtatcagatggtgtc 26906947  T
309 aacgacaatctcggtat 325  Q
    || ||||||||||||||    
26906948 aatgacaatctcggtat 26906964  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 301
Target Start/End: Complemental strand, 44117880 - 44117774
Alignment:
195 ccaacttctttcaatgattgcccttgacttttgttgatcgtcattgcaaatgacaccgatatagggaactgtcgacgctgaaacttgaatggaattcttg 294  Q
    ||||||| ||| |||||||||||||| |||||||| || |||||||||||  | || |  ||||| |||||||  || || |||||||| ||||| ||||    
44117880 ccaacttattttaatgattgcccttggcttttgttaatggtcattgcaaaacaaacggtaataggaaactgtctccgttggaacttgaagggaatccttg 44117781  T
295 tatccga 301  Q
    | |||||    
44117780 tgtccga 44117774  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 337
Target Start/End: Complemental strand, 9030602 - 9030538
Alignment:
273 tgaaacttgaatggaattcttgtatccgatggactcaacgacaatctcggtatataaactatatc 337  Q
    ||||||||||||||||| ||||||||  | ||| | ||||||||||| |||||||| ||| ||||    
9030602 tgaaacttgaatggaatccttgtatcataaggagttaacgacaatctaggtatatagactgtatc 9030538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 48844486 - 48844530
Alignment:
203 tttcaatgattgcccttgacttttgttgatcgtcattgcaaatga 247  Q
    ||||| ||||||| |||||||||||||||| ||||| ||||||||    
48844486 tttcagtgattgctcttgacttttgttgatagtcatcgcaaatga 48844530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 18986232 - 18986553
Alignment:
19 gtctggttcatcattacaaattgcgaaagacttccttatacaccacatttgatgtagtgctcatacaattgccatcttcatccgtgcataatatcttcaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
18986232 gtctggttcatcattacaaattgcgaaagacttccttatacaccacatttgatgtagtgctcatacaattgccatcttcatctgtgcataatatcttcaa 18986331  T
119 tccgtttcttgatgtaactcttgacaccgcaacatatagttgtccgtgggaaaaaaccggttgaggaatgtatactccaacttctttcaatgattgccct 218  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
18986332 tccttttcttgatgtaactcttgacaccgcaacatatagttgtccgtgggaaaaaaccggttgaggaaggtatactccaacttctttcaatgattgccct 18986431  T
219 tgacttttgttgatcgtcattgcaaatgacaccgatatagggaactgtcgacgctgaaacttgaatggaattcttgtatccgatggactcaacgacaatc 318  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
18986432 tgacttttgttgatcgtcattgcaaatgaaaccgatatagggaactgtcgacgctgaaacttaaatggaattcttgtatccgatggactcaacgacaatc 18986531  T
319 tcggtatataaactatatctcc 340  Q
    ||||||||||||||||||||||    
18986532 tcggtatataaactatatctcc 18986553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 41 - 340
Target Start/End: Complemental strand, 52382101 - 52381802
Alignment:
41 gcgaaagacttccttatacaccacatttgatgtagtgctcatacaattgccatcttcatccgtgcataatatcttcaatccgtttcttgatgtaactctt 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||    
52382101 gcgaaagacttccttatacaccacatttgatgtagtgctcatacaattgccatcttcaaccgtcaataatatcttcaatccgtttcttgatgtaactctt 52382002  T
141 gacaccgcaacatatagttgtccgtgggaaaaaaccggttgaggaatgtatactccaacttctttcaatgattgcccttgacttttgttgatcgtcattg 240  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||    
52382001 gacaccgcaacatacagttgtccgtgggaaaaaaccggttgaggaaggtatactccaacttgtttcaatgattgccattgacttttgttgatcgtcattg 52381902  T
241 caaatgacaccgatatagggaactgtcgacgctgaaacttgaatggaattcttgtatccgatggactcaacgacaatctcggtatataaactatatctcc 340  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
52381901 caaatgacgccgatatagggaactgtcgacactgaaacttgaatggaattcttgtatccgatggactcaacgacaatctcggtatataaactatatctcc 52381802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 34 - 325
Target Start/End: Complemental strand, 29133574 - 29133283
Alignment:
34 acaaattgcgaaagacttccttatacaccacatttgatgtagtgctcatacaattgccatcttcatccgtgcataatatcttcaatccgtttcttgatgt 133  Q
    |||||||||| || ||||| | ||| || ||||||||||||||| | ||||| |||   ||||||||  |  |||| |  |||||||||||||| || ||    
29133574 acaaattgcggaacacttcatgatatacgacatttgatgtagtgttgatacagttgttgtcttcatctatcaataaaagtttcaatccgtttctggaagt 29133475  T
134 aactcttgacaccgcaacatatagttgtccgtgggaaaaaaccggttgaggaatgtatactccaacttctttcaatgattgcccttgacttttgttgatc 233  Q
     |||||||| |||||||||||||||||  |||| || || | ||||||||||| |||||  ||||| | || ||  || || || || ||||| || ||     
29133474 tactcttgaaaccgcaacatatagttgatcgtgtgagaagatcggttgaggaaggtatatcccaaccttttgcagcgactgtccctggcttttatttatt 29133375  T
234 gtcattgcaaatgacaccgatatagggaactgtcgacgctgaaacttgaatggaattcttgtatccgatggactcaacgacaatctcggtat 325  Q
    ||||||||||| || || || || ||||||||  |||| |||||||||||||||||||||||||| || ||| ||||||||||||| |||||    
29133374 gtcattgcaaacgatacggaaattgggaactgctgacgttgaaacttgaatggaattcttgtatcggaaggagtcaacgacaatctaggtat 29133283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 34 - 325
Target Start/End: Complemental strand, 53545552 - 53545261
Alignment:
34 acaaattgcgaaagacttccttatacaccacatttgatgtagtgctcatacaattgccatcttcatccgtgcataatatcttcaatccgtttcttgatgt 133  Q
    |||||||||| || ||||| | ||| || ||||||||||||||| | ||||| |||   ||||||||  |  |||| |  ||||||||||| || || ||    
53545552 acaaattgcggaacacttcatgatatacgacatttgatgtagtgttgatacagttgttgtcttcatctatcaataaaagtttcaatccgttcctggaagt 53545453  T
134 aactcttgacaccgcaacatatagttgtccgtgggaaaaaaccggttgaggaatgtatactccaacttctttcaatgattgcccttgacttttgttgatc 233  Q
     |||||||| ||||||||||||||||| ||||  || || || |||||||||| |||||  ||||| | ||  |  || || || || ||||| || ||     
53545452 tactcttgaaaccgcaacatatagttgaccgtatgagaagactggttgaggaaggtatatcccaaccttttgtagcgactgtccctggcttttatttatt 53545353  T
234 gtcattgcaaatgacaccgatatagggaactgtcgacgctgaaacttgaatggaattcttgtatccgatggactcaacgacaatctcggtat 325  Q
    || |||||||| || || || || |||||||| ||||| |||||||||||||||||||||||||| || ||| ||||||||||||| |||||    
53545352 gttattgcaaacgatacggaaattgggaactgccgacgttgaaacttgaatggaattcttgtatcagaaggagtcaacgacaatctaggtat 53545261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 265
Target Start/End: Original strand, 20370777 - 20370895
Alignment:
147 gcaacatatagttgtccgtgggaaaaaaccggttgaggaatgtatactccaacttctttcaatgattgcccttgacttttgttgatcgtcattgcaaatg 246  Q
    |||||||| ||||| || || || || || |||||||||| ||| ||  ||||||||||||||||||| |||||||| |||||||| |||||||||||      
20370777 gcaacataaagttgaccatgagagaacacgggttgaggaaggtagacagcaacttctttcaatgattgtccttgactcttgttgattgtcattgcaaaac 20370876  T
247 acaccgatatagggaactg 265  Q
    | || |||||||| |||||    
20370877 aaacagatataggaaactg 20370895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 209 - 298
Target Start/End: Complemental strand, 925665 - 925576
Alignment:
209 tgattgcccttgacttttgttgatcgtcattgcaaatgacaccgatatagggaactgtcgacgctgaaacttgaatggaattcttgtatc 298  Q
    ||||||||| |||||||||||||| |||||||||||  | |  |||||||||||||| ||||| ||||| || || ||||||||||||||    
925665 tgattgcccctgacttttgttgatggtcattgcaaaacaaatagatatagggaactgacgacgttgaaatttaaaaggaattcttgtatc 925576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 213 - 298
Target Start/End: Original strand, 44703191 - 44703276
Alignment:
213 tgcccttgacttttgttgatcgtcattgcaaatgacaccgatatagggaactgtcgacgctgaaacttgaatggaattcttgtatc 298  Q
    ||||| |||||||||||||| |||||||||||  | || ||||||||||| |||||||| ||||| || || ||||||||||||||    
44703191 tgcccctgacttttgttgatggtcattgcaaaacaaacagatatagggaattgtcgacgttgaaatttaaaaggaattcttgtatc 44703276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 209 - 325
Target Start/End: Complemental strand, 37984791 - 37984675
Alignment:
209 tgattgcccttgacttttgttgatcgtcattgcaaatgacaccgatatagggaactgtcgacgctgaaacttgaatggaattcttgtatccgatggactc 308  Q
    |||||| || ||||||||||| || |||||||||||  |||  | |||||| |||||||  || ||||| ||||| |||||||| ||||| |||||  ||    
37984791 tgattgtccctgacttttgtttatagtcattgcaaaacacaaagctataggaaactgtctgcgttgaaatttgaaaggaattctggtatcagatggtgtc 37984692  T
309 aacgacaatctcggtat 325  Q
    || ||||||||||||||    
37984691 aatgacaatctcggtat 37984675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 325
Target Start/End: Original strand, 24759079 - 24759185
Alignment:
219 tgacttttgttgatcgtcattgcaaatgacaccgatatagggaactgtcgacgctgaaacttgaatggaattcttgtatccgatggactcaacgacaatc 318  Q
    ||||||||||| || |||||||||||  |||  |||||| | ||||| | ||| ||||| ||||| |||||||| ||||| |||||  |||| |||||||    
24759079 tgacttttgtttatagtcattgcaaaacacaaagatataagaaactgcctacgttgaaatttgaaaggaattctggtatcagatggtgtcaatgacaatc 24759178  T
319 tcggtat 325  Q
    |||||||    
24759179 tcggtat 24759185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 325
Target Start/End: Complemental strand, 24826935 - 24826829
Alignment:
219 tgacttttgttgatcgtcattgcaaatgacaccgatatagggaactgtcgacgctgaaacttgaatggaattcttgtatccgatggactcaacgacaatc 318  Q
    ||||||||||| || |||||||||||  |||  |||||| | ||||| | ||| ||||| ||||| |||||||| ||||| |||||  |||| |||||||    
24826935 tgacttttgtttatagtcattgcaaaacacaaagatataagaaactgcctacgttgaaatttgaaaggaattctggtatcagatggtgtcaatgacaatc 24826836  T
319 tcggtat 325  Q
    |||||||    
24826835 tcggtat 24826829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 325
Target Start/End: Original strand, 33648438 - 33648544
Alignment:
219 tgacttttgttgatcgtcattgcaaatgacaccgatatagggaactgtcgacgctgaaacttgaatggaattcttgtatccgatggactcaacgacaatc 318  Q
    ||||||||||| || |||||||||||  |||  |||||||| ||||| | ||| ||||| ||||| |||||| | ||||| |||||  |||| |||||||    
33648438 tgacttttgtttatagtcattgcaaaacacaaagatataggaaactgactacgttgaaatttgaaaggaattatggtatcagatggtgtcaatgacaatc 33648537  T
319 tcggtat 325  Q
    || ||||    
33648538 tcagtat 33648544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 12813319 - 12813360
Alignment:
209 tgattgcccttgacttttgttgatcgtcattgcaaatgacac 250  Q
    ||||||| |||||||||||||||| || ||||||||||||||    
12813319 tgattgctcttgacttttgttgatagtaattgcaaatgacac 12813360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 174
Target Start/End: Complemental strand, 21799974 - 21799890
Alignment:
90 ccatcttcatccgtgcataatatcttcaatccgtttcttgatgtaactcttgacaccgcaacatatagttgtccgtgggaaaaaa 174  Q
    ||||||||||| |||   ||||||||||| || | ||| ||||||||||| || || |||||||| | ||||||||| |||||||    
21799974 ccatcttcatcggtgatcaatatcttcaaaccttctctagatgtaactctcgaaacagcaacatacaattgtccgtgagaaaaaa 21799890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 325
Target Start/End: Original strand, 53024974 - 53025090
Alignment:
209 tgattgcccttgacttttgttgatcgtcattgcaaatgacaccgatatagggaactgtcgacgctgaaacttgaatggaattcttgtatccgatggactc 308  Q
    |||||| || ||||||||||| || ||||||| |||  |||  |||||||| || ||||  || ||||| ||||| ||||||||  |||| |||||  ||    
53024974 tgattgtccctgacttttgtttatagtcattgtaaaacacaaagatataggaaattgtctgcgttgaaatttgaaaggaattctgctatcagatggtgtc 53025073  T
309 aacgacaatctcggtat 325  Q
    || ||||||||||||||    
53025074 aatgacaatctcggtat 53025090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 22 - 192
Target Start/End: Original strand, 78937 - 79107
Alignment:
22 tggttcatcattacaaattgcgaaagacttccttatacaccacatttgatgtagtgctcatacaattgccatcttcatccgtgcataatatcttcaatcc 121  Q
    |||| ||||||||||||||||| |||||||| ||| |||||| |||||||||||||||||| ||||||||||||||||||||  |||||||||||||| |    
78937 tggtgcatcattacaaattgcggaagacttctttaaacaccaaatttgatgtagtgctcatgcaattgccatcttcatccgtcaataatatcttcaattc 79036  T
122 gtttcttgatgtaactcttgacaccgcaacatatagttgtccgtgggaaaaaaccggttgaggaatgtata 192  Q
    ||||||||||||||| ||||||||||||||||| |||||   || ||||||| | |||||||||| |||||    
79037 gtttcttgatgtaacccttgacaccgcaacatacagttggttgtcggaaaaacctggttgaggaaggtata 79107  T

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Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 58 - 337
Target Start/End: Complemental strand, 11236764 - 11236485
Alignment:
58 acaccacatttgatgtagtgctcatacaattgccatcttcatccgtgcataatatcttcaatccgtttcttgatgtaactcttgacaccgcaacatatag 157  Q
    |||| ||||||||||||||||| ||||||||||  |||||||| ||  |||  |  |||||||| || |||||||| |||||||| |||||||||||||     
11236764 acacaacatttgatgtagtgctgatacaattgctgtcttcatctgtcaatagcaatttcaatcctttccttgatgttactcttgagaccgcaacatataa 11236665  T
158 ttgtccgtgggaaaaaaccggttgaggaatgtatactccaacttctttcaatgattgcccttgacttttgttgatcgtcattgcaaatgacaccgatata 257  Q
    ||| ||||| ||||| || |||||||||| |||||  ||||||| ||  || ||||| ||||| || ||||| || ||||| || || || || || ||     
11236664 ttggccgtgtgaaaacacaggttgaggaaggtatatcccaactttttgtaaagattgtccttggctcttgtttatagtcatagcgaacgaaactgaaatt 11236565  T
258 gggaactgtcgacgctgaaacttgaatggaattcttgtatccgatggactcaacgacaatctcggtatataaactatatc 337  Q
    ||||| |||   || ||||||||||||||||| |||||||| || ||  |||| |||||||| || || || ||||||||    
11236564 gggaattgtttgcgttgaaacttgaatggaatccttgtatcagaaggtgtcaatgacaatctagggatgtatactatatc 11236485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 213 - 298
Target Start/End: Complemental strand, 5454149 - 5454064
Alignment:
213 tgcccttgacttttgttgatcgtcattgcaaatgacaccgatatagggaactgtcgacgctgaaacttgaatggaattcttgtatc 298  Q
    ||||| |||||||||||||| |||||||||||  | || ||||||||||||||||| || ||||| || || ||||||||||||||    
5454149 tgcccctgacttttgttgatggtcattgcaaaacaaacagatatagggaactgtcggcgttgaaatttaaaaggaattcttgtatc 5454064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 38642868 - 38642808
Alignment:
124 ttcttgatgtaactcttgacaccgcaacatatagttgtccgtgggaaaaaaccggttgagg 184  Q
    |||||||||||||||||||||  |||||||||||||| || || |||||||| | ||||||    
38642868 ttcttgatgtaactcttgacaatgcaacatatagttgcccatgagaaaaaactgtttgagg 38642808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 294
Target Start/End: Complemental strand, 13262 - 13146
Alignment:
178 gttgaggaatgtatactccaacttctttcaatgattgcccttgacttttgttgatcgtcattgcaaatgacaccgatatagggaactgtcgacgctgaaa 277  Q
    |||||||||  |||| ||| |||| ||||||||| || |||||| |||||||||| ||||||||||| |||||  |||||||||| ||||  || |||||    
13262 gttgaggaagatatattcctacttgtttcaatgactggccttgaattttgttgattgtcattgcaaaggacacatatatagggaattgtcagcgttgaaa 13163  T
278 cttgaatggaattcttg 294  Q
    |||||| ||||| ||||    
13162 cttgaaaggaatccttg 13146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 247
Target Start/End: Original strand, 21667597 - 21667736
Alignment:
108 aatatcttcaatccgtttcttgatgtaactcttgacaccgcaacatatagttgtccgtgggaaaaaaccggttgaggaatgtatactccaacttctttca 207  Q
    |||||||| || || |||||||| |||||||| ||||  |||||||| || || || ||||||||||| |||||||| | ||| |||||||| |  ||||    
21667597 aatatctttaacccttttcttgacgtaactctagacaatgcaacatacagctggccatgggaaaaaacgggttgaggcaagtaaactccaacatgcttca 21667696  T
208 atgattgcccttgacttttgttgatcgtcattgcaaatga 247  Q
     ||| || ||||| ||||| ||||| ||||| ||||||||    
21667697 gtgactgaccttggcttttattgatagtcatagcaaatga 21667736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 39072524 - 39072625
Alignment:
29 tcattacaaattgcgaaagacttccttatacaccacatttgatgtagtgctcatacaattgccatcttcatccgtgcataatatcttcaatccgtttctt 128  Q
    ||||||||||||||| || || || || || |  ||||||||||||||  ||||||||| |||||||||||| ||  |||  || |||||||||||||||    
39072524 tcattacaaattgcggaatacctctttgtaaatgacatttgatgtagtattcatacaatggccatcttcatctgtcaatagaattttcaatccgtttctt 39072623  T
129 ga 130  Q
    ||    
39072624 ga 39072625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 247
Target Start/End: Complemental strand, 38685415 - 38685381
Alignment:
213 tgcccttgacttttgttgatcgtcattgcaaatga 247  Q
    |||||||||||||||||||| ||||||||||||||    
38685415 tgcccttgacttttgttgattgtcattgcaaatga 38685381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 174
Target Start/End: Original strand, 40170578 - 40170704
Alignment:
48 acttccttatacaccacatttgatgtagtgctcatacaattgccatcttcatccgtgcataatatcttcaatccgtttcttgatgtaactcttgacaccg 147  Q
    ||||| |||||||| ||||||||||||||  ||||||| || ||||||||||  |   |||  || |||||||| |||||||| |||||||| || ||||    
40170578 acttctttatacacaacatttgatgtagtattcatacagttaccatcttcatgtgccaatagaattttcaatccttttcttgaggtaactctagaaaccg 40170677  T
148 caacatatagttgtccgtgggaaaaaa 174  Q
    ||||||| |||| ||| | ||||||||    
40170678 caacataaagttttccattggaaaaaa 40170704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 174
Target Start/End: Complemental strand, 23823043 - 23822923
Alignment:
54 ttatacaccacatttgatgtagtgctcatacaattgccatcttcatccgtgcataatatcttcaatccgtttcttgatgtaactcttgacaccgcaacat 153  Q
    |||||||| ||||||||||||||  ||||||| || ||||||||||  |   |||  || |||||||| |||||||| |||||||| || ||||||||||    
23823043 ttatacacaacatttgatgtagtattcatacagttaccatcttcatgtgccaatagaattttcaatccttttcttgaggtaactctagaaaccgcaacat 23822944  T
154 atagttgtccgtgggaaaaaa 174  Q
    | |||| ||| | ||||||||    
23822943 aaagttttccattggaaaaaa 23822923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 328
Target Start/End: Complemental strand, 35351239 - 35351121
Alignment:
210 gattgcccttgacttttgttgatcgtcattgcaaatgacaccgatatagggaactgtcgacgctgaaacttgaatggaattcttgtatccgatggactca 309  Q
    ||||||||||| |||||||  || |||||||||||  | ||  ||||||| |||||   ||||||||| ||||| |||||||||||||| || ||  |||    
35351239 gattgcccttggcttttgtgtatggtcattgcaaagcatacaaatataggaaactgcttacgctgaaatttgaaaggaattcttgtatcagacggcgtca 35351140  T
310 acgacaatctcggtatata 328  Q
     ||| ||||| ||||||||    
35351139 tcgataatcttggtatata 35351121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 160
Target Start/End: Original strand, 33686217 - 33686305
Alignment:
72 gtagtgctcatacaattgccatcttcatccgtgcataatatcttcaatccgtttcttgatgtaactcttgacaccgcaacatatagttg 160  Q
    |||||| | |||||||  ||||| ||||||||  ||||||||||||| || | |||||||||||| | ||| |  ||||||||||||||    
33686217 gtagtgttgatacaatccccatcgtcatccgttaataatatcttcaaaccatctcttgatgtaacacgtgatattgcaacatatagttg 33686305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 238
Target Start/End: Complemental strand, 43382646 - 43382534
Alignment:
126 cttgatgtaactcttgacaccgcaacatatagttgtccgtgggaaaaaaccggttgaggaatgtatactccaacttctttcaatgattgcccttgacttt 225  Q
    |||||||||||||| || |  |||||||| | ||| ||||| || || || |||||||| | ||| || ||||||| ||| | |||||| |||||||| |    
43382646 cttgatgtaactctggatattgcaacataaacttgaccgtgagagaatacgggttgaggtacgtacacaccaacttttttgagtgattgtccttgactct 43382547  T
226 tgttgatcgtcat 238  Q
    ||||||| |||||    
43382546 tgttgattgtcat 43382534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 173
Target Start/End: Complemental strand, 16685201 - 16685136
Alignment:
108 aatatcttcaatccgtttcttgatgtaactcttgacaccgcaacatatagttgtccgtgggaaaaa 173  Q
    ||||||||||| || ||||||||||||||||||||||  |||||||||||||| || || ||||||    
16685201 aatatcttcaagccatttcttgatgtaactcttgacaatgcaacatatagttgcccatgagaaaaa 16685136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 325
Target Start/End: Original strand, 30442819 - 30443092
Alignment:
51 tccttatacaccacatttgatgtagtgctcatacaattgccatcttcatccgtgcataatatcttcaatccgtttcttgatgtaactcttgacaccgcaa 150  Q
    |||||||| || |||||||| || || || |||||||  ||||  ||||||||  ||||||||||||  || |  ||||||||||| | ||| |  ||||    
30442819 tccttataaactacatttgaagtggtccttatacaatccccattgtcatccgttaataatatcttcagaccatcccttgatgtaacacgtgatattgcaa 30442918  T
151 catatagttgtccgtgggaaaaaaccggttgaggaatgtatactccaacttctttcaatgattgcccttgacttttgttgatcgtcattgcaaatgacac 250  Q
    ||||||| || || || || || |||||||| ||||  || |  |||||||  || | |||||| || ||||||||||| || |||||||||||  |||     
30442919 catatagctgcccatgtgagaagaccggttgtggaagatagatgccaacttacttaagtgattgtccctgacttttgtttatagtcattgcaaaacacaa 30443018  T
251 cgatatagggaactgtcgacgctgaaacttgaatggaattcttgtatccgatggactcaacgacaatctcggtat 325  Q
     | |||||| ||||||   || ||||| ||||| |||||||| ||||| |||||  |||| ||||||||||||||    
30443019 agctataggaaactgtatgcgttgaaatttgaaaggaattctggtatcagatgg-ttcaatgacaatctcggtat 30443092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 298
Target Start/End: Original strand, 43026684 - 43026769
Alignment:
213 tgcccttgacttttgttgatcgtcattgcaaatgacaccgatatagggaactgtcgacgctgaaacttgaatggaattcttgtatc 298  Q
    ||||| ||||||||||| ||  ||||||||||  | ||  ||||||||||||||||||| ||||| || || ||||||||||||||    
43026684 tgcccctgacttttgttaatgttcattgcaaaacaaacaaatatagggaactgtcgacgttgaaatttaaaaggaattcttgtatc 43026769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 298
Target Start/End: Complemental strand, 2736760 - 2736609
Alignment:
147 gcaacatatagttgtccgtgggaaaaaaccggttgaggaatgtatactccaacttctttcaatgattgcccttgacttttgttgatcgtcattgcaaatg 246  Q
    |||||||| ||||| || || || || || || ||||||| ||| ||  ||||||||||||| ||||| |||||||| |||||||| |||||||||||      
2736760 gcaacataaagttgaccatgagagaacacgggctgaggaaggtacacagcaacttctttcaacgattgtccttgactcttgttgattgtcattgcaaaac 2736661  T
247 acaccgatatagggaactgtcgacgctgaaacttgaatggaattcttgtatc 298  Q
    | || |||||||| ||||| | ||| || || ||||| || ||||| |||||    
2736660 aaacagatataggaaactgcctacgttggaatttgaacggtattctagtatc 2736609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 325
Target Start/End: Original strand, 31891563 - 31891679
Alignment:
209 tgattgcccttgacttttgttgatcgtcattgcaaatgacaccgatatagggaactgtcgacgctgaaacttgaatggaattcttgtatccgatggactc 308  Q
    |||||| || ||||||||||| || |||||||||||  |||  | |||||| ||||||   || ||||| ||||| |||||||| ||||| |||||  ||    
31891563 tgattgtccctgacttttgtttatagtcattgcaaaacacaaagctataggaaactgtatgcggtgaaatttgaaaggaattctagtatcagatggtgtc 31891662  T
309 aacgacaatctcggtat 325  Q
    || ||||||||||||||    
31891663 aatgacaatctcggtat 31891679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 328
Target Start/End: Original strand, 22390028 - 22390174
Alignment:
182 aggaatgtatactccaacttctttcaatgattgcccttgacttttgttgatcgtcattgcaaatgacaccgatatagggaactgtcgacgctgaaacttg 281  Q
    ||||| |||||  ||||||| ||| | ||| || ||||||||||| || || ||||| ||||| || ||  |||||| |||||||||||| ||||| ||     
22390028 aggaaggtatatgccaacttattttagtgactgtccttgacttttattaatggtcatcgcaaaagatacaaatatagcgaactgtcgacgttgaaattta 22390127  T
282 aatggaattcttgtatccgatggactcaacgacaatctcggtatata 328  Q
    || | |||||| ||||  || |||||||| || ||||| ||||||||    
22390128 aaagaaattctcgtattagaaggactcaatgataatctaggtatata 22390174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 298
Target Start/End: Complemental strand, 25169572 - 25169483
Alignment:
209 tgattgcccttgacttttgttgatcgtcattgcaaatgacaccgatatagggaactgtcgacgctgaaacttgaatggaattcttgtatc 298  Q
    |||||||||||| |||||||| || |||||||||||  | ||  ||||||  ||||||  ||||| ||| ||||| ||||||||||||||    
25169572 tgattgcccttggcttttgtttattgtcattgcaaagcagacaaatatagaaaactgtttacgctaaaatttgaaaggaattcttgtatc 25169483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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