View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18380_high_27 (Length: 329)
Name: NF18380_high_27
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18380_high_27 |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 4390201 - 4390517
Alignment:
| Q |
1 |
tcttccattcaactctatgatgatcttccaaagcttcattcaccaacttaacttcttccctcaaatacttccctttaatctcatcaaaagacggcgggac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4390201 |
tcttccattcaactctatgatgatcttccaaagcttcattcaccaacttaacttcttccctcaaatacttccctttaatctcatcaaaagacggcggcac |
4390300 |
T |
|
| Q |
101 |
aaaccctacaccacatctcgaaaccatatcacacattctaacaaactccttactcttcacagccttcatcggtattgcattgttgtagaaaaacctcgca |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4390301 |
aaaccctacaccacatctcgaaaccatatcacacattctaacaaactccttactcttcaccgccttcatcggtattgcattgttgtagaaaaacctcgca |
4390400 |
T |
|
| Q |
201 |
atcgctctacacgcttcctgctgaatattatcaccactagctattgacccatctctcattctcttgaaaatgtcttcaaaatcaaaactttcttcatcaa |
300 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4390401 |
atcgctcgacacgcttcctcctgaatattatcaccactagctaatgacccatctctcattctcttgaaaatatcttcaaaatcaaaactttcttcatcaa |
4390500 |
T |
|
| Q |
301 |
aatcatttccttttctt |
317 |
Q |
| |
|
|||||||||||||||| |
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| T |
4390501 |
catcatttccttttctt |
4390517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 4377518 - 4377837
Alignment:
| Q |
1 |
tcttccattcaactctatgatgatcttccaaagcttcattcaccaacttaacttcttccctcaaatacttccctttaatctcatcaaaagacggcgggac |
100 |
Q |
| |
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||||||||| ||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4377518 |
tcttccattgaactctatgatgatcgtccaaagctttattgaccaacttaacttcttccctcaaatacttccctttaatctcatcaaaagacggcggcac |
4377617 |
T |
|
| Q |
101 |
aaaccctacaccacatctcgaaaccatatcacacattctaacaaactccttactcttcacagccttcatcggtattgcattgttgtagaaaaacctcgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||| |||||| |||||||||||||||||||||| |
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| T |
4377618 |
aaaccctacaccacatctcgaaaccatatcacacattcgaacaaactccatactcttcaccgccttcattggtattaaattgttgtagaaaaacctcgca |
4377717 |
T |
|
| Q |
201 |
atcgctctacacgcttcctgctga---atattatcaccactagctattgacccatctctcattctcttgaaaatgtcttcaaaatcaaaactttcttcat |
297 |
Q |
| |
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||||||| ||||||||||| || | |||||||||||||||||| || |||||| | || |||||||||| |||||||||||||||||||| || |
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| T |
4377718 |
atcgctcgacacgcttcctcctcatttttattatcaccactagctaatgcgccatctgtttttttcttgaaaatatcttcaaaatcaaaactttcaccac |
4377817 |
T |
|
| Q |
298 |
caaaatcatttccttttctt |
317 |
Q |
| |
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||| || ||||||||||||| |
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|
| T |
4377818 |
caacattatttccttttctt |
4377837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 4385091 - 4385410
Alignment:
| Q |
1 |
tcttccattcaactctatgatgatcttccaaagcttcattcaccaacttaacttcttccctcaaatacttccctttaatctcatcaaaagacggcgggac |
100 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| || |
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| T |
4385091 |
tcttccattgaactctatga---tcttccaaagctttattcaccaacttaacttcttccctcaaatacttccctctaatctcatcaaaagatggcggcac |
4385187 |
T |
|
| Q |
101 |
aaaccctacaccacatctcgaaaccatatcacacattctaacaaactccttactcttcacagccttcatcggtattgcattgttgtagaaaaacctcgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4385188 |
aaaccctacaccacatctcgaaaccatagcacacatttgaacaaactccatactcttcaccgccttcatcggtattgcattgttgtagaaaaacctcgca |
4385287 |
T |
|
| Q |
201 |
atcgctctacacgcttcctgctgaa------tattatcaccactagctattgacccatctctcattctcttgaaaatgtcttcaaaatcaaaactttctt |
294 |
Q |
| |
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||||||| ||||||||||| || || |||||||||||||||||||||||||| |||| || |||||||||| |||||||||||||||||||| |
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| T |
4385288 |
atcgctcgacacgcttcctcctcaatattattattatcaccactagctattgacccacctctttttttcttgaaaatatcttcaaaatcaaaactttcac |
4385387 |
T |
|
| Q |
295 |
catcaaaatcatttccttttctt |
317 |
Q |
| |
|
|| ||| || |||| |||||||| |
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|
| T |
4385388 |
caccaacattatttgcttttctt |
4385410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 45 - 202
Target Start/End: Complemental strand, 5725298 - 5725141
Alignment:
| Q |
45 |
aacttaacttcttccctcaaatacttccctttaatctcatcaaaagacggcgggacaaaccctacaccacatctcgaaaccatatcacacattctaacaa |
144 |
Q |
| |
|
|||| |||||| ||| ||||||| ||||||||||||||||| |||||||| || ||||||||||||| | | ||||||||||||||||| ||| || |
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| T |
5725298 |
aactcaacttcatccgtcaaatatttccctttaatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataa |
5725199 |
T |
|
| Q |
145 |
actccttactcttcacagccttcatcggtattgcattgttgtagaaaaacctcgcaat |
202 |
Q |
| |
|
| || | |||||| || || | | | |||| ||||||||||||||||||| ||||| |
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|
| T |
5725198 |
attcatcactctttaccgcatcaagccgtatgacattgttgtagaaaaaccttgcaat |
5725141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 4370382 - 4370452
Alignment:
| Q |
24 |
tcttccaaagcttcattcaccaacttaacttcttccctcaaatacttccctttaatctcatcaaaagacgg |
94 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||| ||||||| |||||| ||||||||||| ||||||| |
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| T |
4370382 |
tcttccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataagacgg |
4370452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 4365991 - 4366058
Alignment:
| Q |
27 |
tccaaagcttcattcaccaacttaacttcttccctcaaatacttccctttaatctcatcaaaagacgg |
94 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| ||||||| |||||| ||||||||||| ||||||| |
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|
| T |
4365991 |
tccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataagacgg |
4366058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 4370528 - 4370577
Alignment:
| Q |
170 |
cggtattgcattgttgtagaaaaacctcgcaatcgctctacacgcttcct |
219 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||| ||| ||||||| |
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|
| T |
4370528 |
cggtatggcattgttgtagaaaaaccttgcaatcgcttgacatgcttcct |
4370577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 207
Target Start/End: Complemental strand, 4414322 - 4414158
Alignment:
| Q |
44 |
caacttaacttcttccctcaaatacttcccttt-aatctcatcaaaagacggcgggacaaaccctacaccacatctcgaaaccatatcacacattctaac |
142 |
Q |
| |
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|||||||||||||||| |||||| |||||||| || ||||||||||| || || ||||| |||| ||| ||| ||||||| | |||||| ||| |
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| T |
4414322 |
caacttaacttcttccgccaaatatttcccttttaaggtcatcaaaagaaggtggcacaaatcctaacccatgtcttgaaaccaactgacacatagtaat |
4414223 |
T |
|
| Q |
143 |
aaactccttactcttcacagccttcatcggtattgcattgttgtagaaaaacctcgcaatcgctc |
207 |
Q |
| |
|
|||||| | |||||| || || | | |||||| ||||||||||||||||||| |||| ||||| |
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|
| T |
4414222 |
aaactcatcactctttaccgcatcaagcggtatgtcattgttgtagaaaaaccttgcaaccgctc |
4414158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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