View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18380_high_3 (Length: 585)
Name: NF18380_high_3
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18380_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 14 - 569
Target Start/End: Complemental strand, 43463169 - 43462615
Alignment:
| Q |
14 |
cacagaaaacgattgttggcttattgtaactgcaattgtgatgccagtcgaccatagcggaagaactttgattactgctttcaactcctctacttgtctt |
113 |
Q |
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| T |
43463169 |
cacagaaaacgattgttggcttattgtaactgcaattgtgatgccagttgaccatagcggaagaactttgattactgctttcaactcctctacttgtctt |
43463070 |
T |
|
| Q |
114 |
actgtacataaactccatgggtcaattggcatcccattagagtctaaatctttttctctgttcttcataatgcaagccttgttcaagaacctatacaaag |
213 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43463069 |
actgtacataaactccatggatcaattggcatcccattagagtctaaatctttttctctgttcttcataatgcaagccttgttcaagaacctatacaaag |
43462970 |
T |
|
| Q |
214 |
aatcaaatttatgttaattgataaatgtccttatccgtatagtttaattgatagagacattgtattatacatgcggagctgagttcgaaccctgaattct |
313 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43462969 |
aatcaaatttatgttaattgataaatgtccttgtccgtatagtttaattgatagagacattgtattatacatgcggagctgagttcgaaccctgaattct |
43462870 |
T |
|
| Q |
314 |
ccacttattcgaaattctggtcaccaaaaaatattgataaaaatgaagagttttcaacatacattaattgaataagacaaagtattaccttgctttgtcc |
413 |
Q |
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|||||||||||||||| ||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43462869 |
ccacttattcgaaattttggtcaccaaactat-ttaataaaaatgaagagttttcaacatacattaattgaataagacaaagtattaccttgctttgtcc |
43462771 |
T |
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| Q |
414 |
gtgggctgaacaagattagagccactttggaaataccacaaaccagagttgtttggaggcaaagttaagtgtctgtttttccatgatgcaacaatgactt |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43462770 |
gtgggctgaacaagattagagccactttggaaataccacaaaccagagttgtttggaggcaaagttaagtgtctgtttttccatgatgcaacaatgactt |
43462671 |
T |
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| Q |
514 |
gagcaaatccagcaagtaaactcttgtttggtttcactttaacatacataaaagat |
569 |
Q |
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| T |
43462670 |
gagcaaatccagcaagtaaactcttgtttggtttcactttaacatacataaaagat |
43462615 |
T |
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