View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18380_high_30 (Length: 314)
Name: NF18380_high_30
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18380_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 38881356 - 38881061
Alignment:
| Q |
1 |
tggtaagcaagttgccaacatcgcgaccgagagatggaaaacgaaagagtttcggaaaaggattgtgatgaatgtgtaagaaacatgcctacacaaaaat |
100 |
Q |
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| T |
38881356 |
tggtaagcaagttgccaacatcgcgaccgagagatggaaaacgaaagagtttcggaaaaggattgtgatgaacgtgtaagaaacatgcctacacaaaaat |
38881257 |
T |
|
| Q |
101 |
atgatttgaattgtgcattttcttttagtttatgtgtaacagattgtgttaagcataagtccaaatgttgaaatctttttgttttctatttgagcactta |
200 |
Q |
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| T |
38881256 |
atgatttgaattgtgcattttcttttagtttatgtgtaacagattgtgttaagcataagtccaaatgttgaaatctttttgttttctatttgagcactta |
38881157 |
T |
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| Q |
201 |
caagactcaatatctttgtcactgacaatatttacgatatgaatttttcaaaatagcgtttcttgattcctttatgaatttcagcttgtggcattg |
296 |
Q |
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| T |
38881156 |
caagactcaatatctttgtcagtgacaatatttacgatatgaatttttcaaaatagcgtttcttgattcctttatgaatttcagctagtggcattg |
38881061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 14630989 - 14630860
Alignment:
| Q |
4 |
taagcaagttgccaacatcgcgaccgagagatggaaaacgaaagagtttcggaaaaggattgtgatgaatgtgtaagaaacatgcctacacaaaaatatg |
103 |
Q |
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| T |
14630989 |
taagcaagaagccaacattccaaccgagagatggaaaatcaaagagaaccggaaaagggttgtgaagaaaatgtaagaaacatgactacacaaaaatatg |
14630890 |
T |
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| Q |
104 |
atttgaattgtgcattttcttttagtttat |
133 |
Q |
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| T |
14630889 |
atttgaattgcacattctcttttaatttat |
14630860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 14630823 - 14630748
Alignment:
| Q |
133 |
tgtgtaacagattgtgttaagcataagtccaaatgttgaaatctttttgttttctatttgagcacttacaagactc |
208 |
Q |
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| T |
14630823 |
tgtgtaacagattgtgttaagcataagttcaaatgttaaaatcttcttgttttctacttgagcacttgcaatactc |
14630748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 134 - 217
Target Start/End: Original strand, 15621125 - 15621208
Alignment:
| Q |
134 |
gtgtaacagattgtgttaagcataagtccaaatgttgaaatctttttgttttctatttgagcacttacaagactcaatatcttt |
217 |
Q |
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| T |
15621125 |
gtgtaacaaaatgtgttaagcataagttcaaacgttaaaatctttttgttttctactcgagcatttacaattctcaatatcttt |
15621208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 217
Target Start/End: Original strand, 15644894 - 15644977
Alignment:
| Q |
134 |
gtgtaacagattgtgttaagcataagtccaaatgttgaaatctttttgttttctatttgagcacttacaagactcaatatcttt |
217 |
Q |
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| T |
15644894 |
gtgtaacaaaatgtgttaagcataaattcaaacattaaaatctttttgttttctactcgagcatttacaattctcaatatcttt |
15644977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 16641417 - 16641374
Alignment:
| Q |
133 |
tgtgtaacagattgtgttaagcataagtccaaatgttgaaatct |
176 |
Q |
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| T |
16641417 |
tgtgtaacagattgtgttaagcataagttcaaatgttaaaatct |
16641374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 113
Target Start/End: Complemental strand, 16641562 - 16641475
Alignment:
| Q |
26 |
accgagagatggaaaacgaaagagtttcggaaaaggattgtgatgaatgtgtaagaaacatgcctacacaaaaatatgatttgaattg |
113 |
Q |
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|||||||||||||||| |||||| ||||||| || ||||| ||| ||||||||||||||||||| ||||||| ||||| ||||| |
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| T |
16641562 |
accgagagatggaaaatcaaagagaaccggaaaaagactgtgaagaaaatgtaagaaacatgcctacagaaaaatacgatttaaattg |
16641475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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