View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18380_high_35 (Length: 288)
Name: NF18380_high_35
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18380_high_35 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 40819618 - 40819350
Alignment:
| Q |
1 |
aaagaaacagtagacataaaatgttatatgatatataagaagaaaaaattaacttgaataattggactcgaattcacacaacttagtcaatctgaatttc |
100 |
Q |
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| T |
40819618 |
aaagaaacagtagacataaaatgctatatgatatataagaagaaaaaattaacttgaataattggactcgaattcacacaacttagtcaatctgaatttc |
40819519 |
T |
|
| Q |
101 |
atgatagaaatcaagtgatttatgttgtaacttcaacaagtaaagaacttgatcgtgtgattgttttttccagtcgaggtcattgattgcaatgatcgat |
200 |
Q |
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| T |
40819518 |
gtgatagaaatcaagtgatttatgttgtaacttcaacaagtaaagaacttgatcgtgtgatt-ttttttccagtcaaggtcattgattgcaatgatcgat |
40819420 |
T |
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| Q |
201 |
gttgacaacatcaatttcatttatcataaaatctagattaccatctcacatgcatatcacaagattttag |
270 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40819419 |
gttgacaatatcaatttcatttatcataaaatctagattaccatctcacatgcatatcacaagattttag |
40819350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 9515918 - 9516193
Alignment:
| Q |
1 |
aaagaaacagtagacataaaatgttatatgatatataagaagaaaaaa--ttaacttgaataattggactcgaattcacacaacttagtcaatctgaatt |
98 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||| || |
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| T |
9515918 |
aaagaaacaatagacataaaatgttatatgatatataagaagaaaaaaaattaacttgactaattggactcgaattcacacaacttagccaatctgactt |
9516017 |
T |
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| Q |
99 |
tcatgatagaaatcaa--gtgatttatgttgtaacttcaacaag-taaagaacttgatcgtgtgattgttttttc-cagtcgaggtcattgattgcaatg |
194 |
Q |
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|||||||||||||||| |||||||||||||||||||||| || ||||||||||||| || ||||| |||||| || | ||||||||||||||||||| |
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| T |
9516018 |
tcatgatagaaatcaaaagtgatttatgttgtaacttcaaaaatataaagaacttgatggtatgatttttttttaacaattgaggtcattgattgcaatg |
9516117 |
T |
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| Q |
195 |
atcgatgttgacaacatcaatttcatttatcataaaatctagattaccatctcacatgcatatcacaagattttag |
270 |
Q |
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| | |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
9516118 |
aacaatgttgacaacatcaatttcatttgtcataatatctagattaccatctcacatgcatatcacaatattttag |
9516193 |
T |
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