View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18380_high_37 (Length: 270)
Name: NF18380_high_37
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18380_high_37 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 27429391 - 27429644
Alignment:
| Q |
1 |
cattaatacagacacctttgttatttcatgcaatgaaacactgaacctatacacttataaccttatctcatacagtgactcatgttgttctcatatggta |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27429391 |
cattaatacagacacccttgttatttcatgcaatgaaacactgaacctatacacttataaccttatctcatacagtgactcatgttgttctcatatggta |
27429490 |
T |
|
| Q |
101 |
caagtataatactacataatcactctgcacgttgcttttattattcgcaactacactttgcttttatcttaaagaagatattatttttccatcacaaaca |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27429491 |
caagtataataccacataatcactctgcacgttgcttttattattcgcaactacactttgcttttatcttaaagaagacattatttttccatcacaaaca |
27429590 |
T |
|
| Q |
201 |
caagcaaaatcactatatatgacacattttttgttattgataaattatgtcaca |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27429591 |
caagcaaaatcactatatatgacacattttttgttattgataaattatgtcaca |
27429644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 27446785 - 27446841
Alignment:
| Q |
122 |
actctgcacgttgcttttattattcgcaac--tacactttgcttttatcttaaagaa |
176 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||| |||||||||| |||||||| |
|
|
| T |
27446785 |
actctgcacgttgcttttattattcacaactatacacattgcttttattttaaagaa |
27446841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University