View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18380_high_38 (Length: 267)
Name: NF18380_high_38
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18380_high_38 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 1458505 - 1458258
Alignment:
| Q |
1 |
gaagtattataccaaattgacatcctcgtttttcatctgctcaaggtttatgctacccatggtgggagatcgagctgaacaatgagacaccaaataatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1458505 |
gaagtattataccaaattgacatcctcgtttttcatctgctcaaggttgatgctacccatggtgggagatcgagctgaagaatgagacaccaaataatgt |
1458406 |
T |
|
| Q |
101 |
gaattattagagttgtttaaatagaggggattgaagggtagagagtcatagaatgagtgaaaaaagttcaatgaaggatgagaatgaatttgaaagatag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1458405 |
gaattattagagttgtttaaatagaggggattgaagggtagagagtcatagaatgagtga-aaaagttcaatgaaggatgagaatgaatttgaaagatag |
1458307 |
T |
|
| Q |
201 |
aggcttgaatatagggttttcagttgtgttagggcatacgtgatgtgaa |
249 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
1458306 |
aggcttgaatatagggttttctgttatgttagggcatacgtgatgtgaa |
1458258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 88
Target Start/End: Complemental strand, 26786603 - 26786521
Alignment:
| Q |
6 |
attataccaaattgacatcctcgtttttcatctgctcaaggtttatgctacccatggtgggagatcgagctgaacaatgagac |
88 |
Q |
| |
|
|||||||||||| ||||| ||||||||| | |||||||||||| ||||| ||||| || ||||| ||||||| |||||||| |
|
|
| T |
26786603 |
attataccaaatcgacattctcgttttttaactgctcaaggttgatgctggccatgctgagagatttagctgaaaaatgagac |
26786521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University