View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18380_high_4 (Length: 574)
Name: NF18380_high_4
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18380_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 18 - 562
Target Start/End: Complemental strand, 43489671 - 43489125
Alignment:
| Q |
18 |
taattaaggtgttgttcaaacatgaccttagggcttagaccatataactatgaaacatgaaactctccacacgcatgtatgtggttgcctttcaactaaa |
117 |
Q |
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| T |
43489671 |
taattaaggtgttattcaaacatgaccttagggcttagaccatatatctatgaaacatgaaactctccacacgcatgtatgtggttgcctttcaactaaa |
43489572 |
T |
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| Q |
118 |
ttatcagccatagaatgaaatcatatgcattgatcaccttattcttgaggtcacaactaccaacgtggaagttcacttggtagtaaagcattgacatatg |
217 |
Q |
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| T |
43489571 |
ttatcagccatagaatgaaatcatatacattgatcaccttattcttgaggtcacaactaccaacgtggaagttcacttggtagtgaagcattgacatatg |
43489472 |
T |
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| Q |
218 |
ggaaatttaaaagtatgtacacaactacatatcactaaaagctatacgatacatcacattcacctcataaatcttcttgaaaaatctagcaattaagttc |
317 |
Q |
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| T |
43489471 |
ggaaatttaaaagtatgtacacaactacatatcactaaaagttatacgatacatcacattcacctcataaatcttcttgaaaaatctagcaattaagttc |
43489372 |
T |
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| Q |
318 |
acgatcattgaaaactgacatttgcatttctaacatccacacatctcacattcttagtagcaaaacacaactattataaataagattgttcctcctagct |
417 |
Q |
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| T |
43489371 |
acgatcattgaaaactgacatttgcatttctaacatccacacatctcacattcttagtagcaaaacacaactattataaataagattgttcctcctagct |
43489272 |
T |
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| Q |
418 |
agtttcttcaatattcataacacatttatcatat--tcttactaacaaatacaactattatggcacctcatggagattcattacctagctcaatctctag |
515 |
Q |
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| T |
43489271 |
agtttcttcaatattcataacacatttatcatattctcttactaacaaatacaactattatggcacctcatggagattcattacctagctcaatctctag |
43489172 |
T |
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| Q |
516 |
gaccaacaacattgtatgctccaaaccaccaaaacctaattcatctc |
562 |
Q |
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| T |
43489171 |
gagcaacaacattgtatgctccaaaccaccaaaacctaattcatctc |
43489125 |
T |
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