View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18380_high_9 (Length: 485)

Name: NF18380_high_9
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18380_high_9
NF18380_high_9
[»] chr8 (4 HSPs)
chr8 (18-469)||(5559086-5559539)
chr8 (18-142)||(25637223-25637348)
chr8 (199-229)||(34150019-34150049)
chr8 (244-273)||(34149971-34150000)
[»] chr2 (5 HSPs)
chr2 (31-469)||(2694433-2694871)
chr2 (20-229)||(31330575-31330798)
chr2 (20-229)||(31337296-31337519)
chr2 (244-281)||(31316315-31316352)
chr2 (136-164)||(8032255-8032283)
[»] chr5 (2 HSPs)
chr5 (18-454)||(37367421-37367858)
chr5 (18-469)||(41529715-41530174)
[»] chr3 (2 HSPs)
chr3 (31-469)||(19357655-19358097)
chr3 (244-281)||(18112765-18112802)
[»] chr7 (3 HSPs)
chr7 (160-285)||(34455225-34455350)
chr7 (18-166)||(4342578-4342727)
chr7 (81-166)||(3077439-3077524)
[»] chr4 (1 HSPs)
chr4 (184-229)||(31662699-31662744)


Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 469
Target Start/End: Original strand, 5559086 - 5559539
Alignment:
Q  18 caaacagcaacaacaacaaaatttatactactaacagcccaaaaacagagtcacatagaatcccaaagtcagtaacaacttatacatctaatcaatcaac 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5559086 caaacagaaacaacaacaaaatttatactactaacagcccaaaaacagagtcatatagaatcccaaagtcagtaacaacttatacatctaatcaatcaac 5559185  T
Q  118 ataacttgaatttcttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacattcagcccctgcctcaatcttcttgccaagc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5559186 ataacttgaatttcttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacattcagcccctgcctcaatcttcttgccaagc 5559285  T
Q  218 caaaccctagcttcaatattcttgtttcttgctcaagcttgcctctaatgctcaaaacacaacacaaaaatcacttttctacaacatgaaatgtcatttc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5559286 caaaccctagcttcaatattcttgtttcttgctcaagcttgcctctaacgctcaaaacacaacacaaaaatcacttttctacaacatgaaatgtcatttc 5559385  T
Q  318 tagcttggttttgctacaaaagtgaaataggtaatggtgggagtgaaagaaaggaacacgtgagggagggggaagagagaagaaggaggttctga-tttt 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||    
T  5559386 tagcttggttttgctacaaaagtgaaataggtaatggtgggagtgaaagaaaggaacacgtgagggagagggaagagagaagagggaggttctgattttt 5559485  T
Q  417 tgtgagagaagagtgtagaagaatgtggaaa-attttagttttgttctatttgt 469  Q
    |||||||||||||||||||||||||||||||  |||||||||| ||||||||||    
T  5559486 tgtgagagaagagtgtagaagaatgtggaaattttttagttttattctatttgt 5559539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 25637348 - 25637223
Alignment:
Q  18 caaacagcaacaacaacaaaatttatactactaacagcccaaaa-acagagtca-catagaatcccaaagtcagtaacaacttatacatctaatcaatca 115  Q
    ||||||||||||||||||| |||  ||||||||| ||||||||| ||||||| | |  ||||| |||||| || ||||| ||||| | | |||| |||||    
T  25637348 caaacagcaacaacaacaacattgctactactaagagcccaaaatacagagttatctcagaat-ccaaaggcaataacagcttatgcttataattaatca 25637250  T
Q  116 acataacttgaatttcttctcaaaata 142  Q
    ||||||||| |||||||||||||||||    
T  25637249 acataacttaaatttcttctcaaaata 25637223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 229
Target Start/End: Complemental strand, 34150049 - 34150019
Alignment:
Q  199 ctcaatcttcttgccaagccaaaccctagct 229  Q
    |||||||||||||||||||||||||||||||    
T  34150049 ctcaatcttcttgccaagccaaaccctagct 34150019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 273
Target Start/End: Complemental strand, 34150000 - 34149971
Alignment:
Q  244 tcttgctcaagcttgcctctaatgctcaaa 273  Q
    ||||||||||||||||||||||||||||||    
T  34150000 tcttgctcaagcttgcctctaatgctcaaa 34149971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 31 - 469
Target Start/End: Complemental strand, 2694871 - 2694433
Alignment:
Q  31 caacaaaatttatactactaacagcccaaaaacagagtca-catagaatcccaaagtcagtaacaacttatacatctaatcaatcaacataacttgaatt 129  Q
    |||||||||||||||||||||||||||||||||||||| | |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2694871 caacaaaatttatactactaacagcccaaaaacagagttatcgcagaatcccaaagtcagtaacaacttatacatctaatcaatcaacataacttgaatt 2694772  T
Q  130 tcttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacattcagcccctgcctcaatcttcttgccaagccaaaccctagct 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2694771 tcttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacattcagcccctgcctcaatcttcttgccaagccaaaccctagct 2694672  T
Q  230 tcaatattcttgtttcttgctcaagcttgcctctaatgctcaaaacacaacacaaaaatcacttttctacaacatgaaatgtcatttctagcttggtttt 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2694671 tcaatattcttgtttcttgctcaagcttgcctctaatgctcaaaacacaacacaaaaatcacttttctacaacatgaaatgtcatttctagcttgatttt 2694572  T
Q  330 gctacaaaagtgaaataggtaatggtgggagtgaaagaaaggaacacgtgagggagggggaagagagaagaaggaggttctgatttttgtgagagaagag 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  2694571 gctacaaaagtgaaataggtaatggtgggagtgaaagaaaggaacacctgagggagggggaagagagaagagggaggttctgatttttgtgagag-agag 2694473  T
Q  430 tgtagaagaatgtggaaaattttagttttgttctatttgt 469  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  2694472 tgtagaaaaatgtggaaaattttagttttgttctatttgt 2694433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 31330798 - 31330575
Alignment:
Q  20 aacagcaacaacaacaaaatttatactactaacagcccaaaaacagagtca-catagaatcccaaagtcagtaacaacttatacatctaatcaatcaaca 118  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||| || ||||| |||||   | ||||| ||||||| |||||| ||||||||    
T  31330798 aacagcaacaacagcaaaattgatactactaacagcccaaaaacagagtcatcacagaatgccaaatgaaataacagcttatacttctaatgaatcaaca 31330699  T
Q  119 taacttgaatttcttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacat-------------tcagcccctgcctcaatc 205  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||| |||    
T  31330698 taacttaaatttcttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacattcagtttcaacattcagcccctgcctctatc 31330599  T
Q  206 ttcttgccaagccaaaccctagct 229  Q
    ||||||||||||||||||||||||    
T  31330598 ttcttgccaagccaaaccctagct 31330575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 31337519 - 31337296
Alignment:
Q  20 aacagcaacaacaacaaaatttatactactaacagcccaaaaacagagtca-catagaatcccaaagtcagtaacaacttatacatctaatcaatcaaca 118  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||| || ||||| |||||   | ||||| ||||||| |||||| ||||||||    
T  31337519 aacagcaacaacagcaaaattgatactactaacagcccaaaaacagagtcatcacagaatgccaaatgaaataacagcttatacttctaatgaatcaaca 31337420  T
Q  119 taacttgaatttcttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacat-------------tcagcccctgcctcaatc 205  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||| |||    
T  31337419 taacttaaatttcttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacattcagtttcaacattcagcccctgcctctatc 31337320  T
Q  206 ttcttgccaagccaaaccctagct 229  Q
    ||||||||||||||||||||||||    
T  31337319 ttcttgccaagccaaaccctagct 31337296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 281
Target Start/End: Original strand, 31316315 - 31316352
Alignment:
Q  244 tcttgctcaagcttgcctctaatgctcaaaacacaaca 281  Q
    |||||||||| |||||||||||||||||||||||||||    
T  31316315 tcttgctcaaacttgcctctaatgctcaaaacacaaca 31316352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 164
Target Start/End: Complemental strand, 8032283 - 8032255
Alignment:
Q  136 caaaataatcacttttacctcaatttaag 164  Q
    |||||||||||||||||||||||||||||    
T  8032283 caaaataatcacttttacctcaatttaag 8032255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Complemental strand, 37367858 - 37367421
Alignment:
Q  18 caaacagcaacaacaacaaaatttatactactaacagcccaaaaacagagtca-catagaatcccaaagtcagtaacaacttatacatctaatcaatcaa 116  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  37367858 caaacagcaacaacgacaaaatttatactactaacagcccaaaaacagattcatcatagaatcccaaagtcagtaacaacttatacatctaatcaatcaa 37367759  T
Q  117 cataacttgaatttcttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacattcagcccctgcctcaatcttcttgccaag 216  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37367758 cataacttgaattgcttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacattcagcccctgcctcaatcttcttgccaag 37367659  T
Q  217 ccaaaccctagcttcaatattcttgtttcttgctcaagcttgcctctaatgctcaaaacacaacacaaaaatcacttttctacaacatgaaatgtcattt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37367658 ccaaaccctagcttcaatattcttgtttcttgctcaagcttgcctctaatgctcaaaacacaacacaaaaatcacttttctacaacttgaaatgtcattt 37367559  T
Q  317 ctagcttggttttgctacaaaagtgaaataggtaatggtgggagtgaaagaaaggaacacgtgagggagggggaagagagaagaaggaggttctgatttt 416  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||    
T  37367558 ctagcttgattttgctacaaaagtgaaataggtaatggtgggagtgaaagaaaggaacacgtgagagagggggaagagagaagagggatgttctgatttt 37367459  T
Q  417 tgtgagagaagagtgtagaagaatgtggaaaattttag 454  Q
    |||||||||||||||||||| |||||||||||||||||    
T  37367458 tgtgagagaagagtgtagaaaaatgtggaaaattttag 37367421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 18 - 469
Target Start/End: Original strand, 41529715 - 41530174
Alignment:
Q  18 caaacagcaacaacaacaaaatttatactactaacagcccaaaaacagagtcacatagaatcccaaagtcagtaacaacttatacatctaatcaatcaac 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41529715 caaacagaaacaacaacaaaatttatactactaacagcccaaaaacagagtcatatagaatcccaaagtcagtaacaacttatacatctaatcaatcaac 41529814  T
Q  118 ataacttgaatttcttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacattcagcccctgcctcaatcttcttgccaagc 217  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41529815 ataacttgaatttcttcccaaaataatcacttttacctcaatttaagctattaatcacttatacttacattcagcccctgcctcaatcttcttgccaagc 41529914  T
Q  218 caaaccctagcttcaatattcttgtttcttgctcaagcttgcctctaatgctcaaaacacaacacaaaaatcacttttctacaacatgaaatgtcatttc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41529915 caaaccctagcttcaatattcttgtttcttgctcaagcttgcctctaacgctcaaaacacaacacaaaaatcacttttctacaacatgaaatgtcatttc 41530014  T
Q  318 tagcttggttttgctacaaaagtgaaataggtaatggtgggagtgaaagaaaggaacacgtgag---ggagggggaagagagaagaaggaggttctga-- 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| |||||||||||      
T  41530015 tagcttggttttgctacaaaagtgaaataggtaatggtgggagtgaaagaaaggaacacgtgagggaggagggggaagagagaagagggaggttctgatt 41530114  T
Q  413 --tttttgtgagagaagagtgtagaagaatgtggaaa-attttagttttgttctatttgt 469  Q
      |||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||    
T  41530115 tttttttgtgagagaagagtgtagaagaatgtggaaattttttagttttattctatttgt 41530174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 31 - 469
Target Start/End: Complemental strand, 19358097 - 19357655
Alignment:
Q  31 caacaaaatttatactactaacagcccaaaaacagagtcacatagaatcccaaagtcagtaacaacttatacatctaatcaatcaacataacttgaattt 130  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19358097 caacaaaatttatactactaacagcccaaaaacagagtcatatagaatcccaaagtcagtaacaacttatacatctaatcaatcaacataacttgaattt 19357998  T
Q  131 cttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacattcagcccctgcctcaatcttcttgccaagccaaaccctagctt 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19357997 cttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacattcagcccctgcctcaatcttcttgccaagccaaaccctagctt 19357898  T
Q  231 caatattcttgtttcttgctcaagcttgcctctaatgctcaaaacacaacacaaaaatcacttttctacaacatgaaatgtcatttctagcttggttttg 330  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19357897 caatattcttgtttcttgctcaagcttgcctctaacgctcaaaacacaacacaaaaatcacttttctacaacatgaaatgtcatttctagcttggttttg 19357798  T
Q  331 ctacaaaagtgaaataggtaatggtgggagtgaaagaaaggaacacgtgagggagggggaagagagaagaaggaggttctga--tttttgtgagagaaga 428  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||    
T  19357797 ctacaaaagtgaaataggtaat-gtgggagtgaaagaaaggaacacgtgagggagggggaagagagaagagggaggttctgatttttttgtgagagaaga 19357699  T
Q  429 gtgtagaagaatgtggaaa---attttagttttgttctatttgt 469  Q
    |||||||||||||||||||    |||||||||| ||||||||||    
T  19357698 gtgtagaagaatgtggaaattttttttagttttattctatttgt 19357655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 281
Target Start/End: Original strand, 18112765 - 18112802
Alignment:
Q  244 tcttgctcaagcttgcctctaatgctcaaaacacaaca 281  Q
    |||||||||| |||||||||||||||||||||||||||    
T  18112765 tcttgctcaaacttgcctctaatgctcaaaacacaaca 18112802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 3e-43; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 160 - 285
Target Start/End: Complemental strand, 34455350 - 34455225
Alignment:
Q  160 ttaagctattaatcacttatacttacattcagcccctgcctcaatcttcttgccaagccaaaccctagcttcaatattcttgtttcttgctcaagcttgc 259  Q
    ||||||||| ||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||      
T  34455350 ttaagctatgaatcacttatacttacagtcagcccttgcttcaatcttcttgccaagccaaaccctagcttcaatatccttgtttcttgctcaagcttat 34455251  T
Q  260 ctctaatgctcaaaacacaacacaaa 285  Q
    ||||||||||  ||||||||||||||    
T  34455250 ctctaatgcttcaaacacaacacaaa 34455225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 4342578 - 4342727
Alignment:
Q  18 caaacagcaacaacaacaaaatttatactactaacagcccaaaa-acagagtca-catagaatcccaaagtcagtaacaacttatacatctaatcaatca 115  Q
    ||||||||||||||||||| |||  ||||||||||||||||||| ||||||| | |  ||||| |||||| || ||||| ||||| | | |||| |||||    
T  4342578 caaacagcaacaacaacaacattgctactactaacagcccaaaatacagagttatctcagaat-ccaaaggcaataacagcttatgcttataattaatca 4342676  T
Q  116 acataacttgaatttcttctcaaaataatcacttttacctcaatttaagct 166  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||| ||||    
T  4342677 acataacttaaatttcttctcaaaataagcacttttacctcaattttagct 4342727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 166
Target Start/End: Complemental strand, 3077524 - 3077439
Alignment:
Q  81 caaagtcagtaacaacttatacatctaatcaatcaacataacttgaatttcttctcaaaataatcacttttacctcaatttaagct 166  Q
    ||||| || ||||||||||| | |||||||| |||||||||||| || |   |||||||||||||| |||||||||| ||| ||||    
T  3077524 caaaggcaataacaacttatgcttctaatcattcaacataacttaaactatatctcaaaataatcatttttacctcacttttagct 3077439  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 31662744 - 31662699
Alignment:
Q  184 acattcagcccctgcctcaatcttcttgccaagccaaaccctagct 229  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  31662744 acattcagcccctgcctctatcttcttgccaagccaaaccctagct 31662699  T

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