View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18380_low_11 (Length: 471)
Name: NF18380_low_11
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18380_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 111; Significance: 8e-56; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 346 - 460
Target Start/End: Complemental strand, 17130137 - 17130023
Alignment:
| Q |
346 |
tttgctagtatttaatttattgcatactggttgtgcgactgatagtaatggaggagatgtaactggtctcgatcacttccattgtgcttgtcggagttct |
445 |
Q |
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| T |
17130137 |
tttgctagtatttaatttattgcatactggttgtgcgactgatagtaatggaggagatgtaactggtctcgatcacttccattgtgcttgttggagttct |
17130038 |
T |
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| Q |
446 |
tttttgtttgcctat |
460 |
Q |
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| T |
17130037 |
tttttgtttgcctat |
17130023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 172 - 331
Target Start/End: Complemental strand, 19973604 - 19973443
Alignment:
| Q |
172 |
aacatgtaaactcttatttgattgatgacagttatggcatagttgcaatagttctatatgtctg-tttttatattag--tctaacatatgcaatgctaag |
268 |
Q |
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| T |
19973604 |
aacatgtaaactcttatttgattgatgacagctagggcatcgctgcattagttct-tatgtgtgctttttgtattagattctaacatatgcaatgctaag |
19973506 |
T |
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| Q |
269 |
atttaatggttttcaaaggcatgacctttgtttaattttgactctgtcatttagattttcaaa |
331 |
Q |
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| T |
19973505 |
atttaatggttttcaaaggcatgagatctgtttcattttgactctgtcatttagattttcaaa |
19973443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 360 - 460
Target Start/End: Complemental strand, 17165709 - 17165607
Alignment:
| Q |
360 |
atttattgcatactggtt--gtgcgactgatagtaatggaggagatgtaactggtctcgatcacttccattgtgcttgtcggagttcttttttgtttgcc |
457 |
Q |
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| T |
17165709 |
atttattgcatactggttttgtgtgactaatagtaatggagaagacttaaccagtctcgatcacttccattgtgcttgtcggagttctttcttgtttgcc |
17165610 |
T |
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| Q |
458 |
tat |
460 |
Q |
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||| |
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| T |
17165609 |
tat |
17165607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 310
Target Start/End: Original strand, 19929491 - 19929630
Alignment:
| Q |
172 |
aacatgtaaactcttatttgattgatgacagttatggcatag-ttgcaatagttctatatgtct-gtttttatattag--tctaacatatgcaatgctaa |
267 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||| || |||||||||| ||||||| |||||| ||||| ||| | ||||||||| ||| |
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| T |
19929491 |
aacatgtaaactcttatttgattgatgaaagttatgtcatagtttacaatagttct-tatgtctactttttaaattagattct-tcgtatgcaatggtaa |
19929588 |
T |
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| Q |
268 |
gatttaatggttttcaaaggcatgacctttgtttaattttgac |
310 |
Q |
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| T |
19929589 |
gatctgat-gctttcaaaggcatgacctctgtttcattttgac |
19929630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 19935768 - 19935845
Alignment:
| Q |
172 |
aacatgtaaactcttatttgattgatgacagttatggcatagttgcaatagttc-tatatgtct-gtttttatattag |
247 |
Q |
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||||||||||||||| |||||||||||| ||||| | ||||||||| ||||||| ||||||||| |||||||||||| |
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| T |
19935768 |
aacatgtaaactcttgtttgattgatgaaagttaggtcatagttgctatagttcttatatgtctactttttatattag |
19935845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 19966907 - 19966984
Alignment:
| Q |
172 |
aacatgtaaactcttatttgattgatgacagttatggcatagttgcaatagttc-tatatgtct-gtttttatattag |
247 |
Q |
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||||||||||||||| |||||||||||| ||||| | ||||||||| ||||||| ||||||||| |||||||||||| |
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| T |
19966907 |
aacatgtaaactcttgtttgattgatgaaagttaggtcatagttgctatagttcttatatgtctactttttatattag |
19966984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 47605336 - 47605274
Alignment:
| Q |
172 |
aacatgtaaactcttatttgattgatgacagttatggcatagttgcaatagttc-tatatgtct |
234 |
Q |
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|||||||||||||| |||| || ||||| ||||| ||||||||||||||||||| ||||||||| |
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| T |
47605336 |
aacatgtaaactctaattt-atggatgaaagttagggcatagttgcaatagttcttatatgtct |
47605274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 19928492 - 19928548
Alignment:
| Q |
80 |
agcattttcagttgcaggacccttgttattcttcatttgcatgggctaacagtgaat |
136 |
Q |
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|||||||||||||| |||||||||||| |||||||||| | ||||| | ||||||| |
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| T |
19928492 |
agcattttcagttgtaggacccttgtttctcttcatttgaaagggcttaaagtgaat |
19928548 |
T |
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