View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18380_low_13 (Length: 444)

Name: NF18380_low_13
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18380_low_13
NF18380_low_13
[»] chr6 (3 HSPs)
chr6 (17-441)||(17591590-17592007)
chr6 (17-103)||(17698292-17698376)
chr6 (18-98)||(17737267-17737345)
[»] chr5 (1 HSPs)
chr5 (142-206)||(11970360-11970424)
[»] chr7 (3 HSPs)
chr7 (142-206)||(44057542-44057606)
chr7 (160-206)||(39136029-39136075)
chr7 (167-206)||(4088562-4088601)
[»] chr8 (2 HSPs)
chr8 (207-284)||(33023785-33023861)
chr8 (145-206)||(41178185-41178246)
[»] chr2 (2 HSPs)
chr2 (165-206)||(44194926-44194967)
chr2 (167-206)||(4603219-4603258)
[»] chr3 (2 HSPs)
chr3 (138-206)||(54918248-54918316)
chr3 (142-194)||(46160846-46160898)
[»] chr1 (2 HSPs)
chr1 (142-206)||(6596644-6596708)
chr1 (169-206)||(18428364-18428401)
[»] chr4 (1 HSPs)
chr4 (143-206)||(1019033-1019096)


Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Complemental strand, 17592007 - 17591590
Alignment:
Q  17 attaattgtactcttttgttttctatataatatatatttgtcattcaaaataaaatgtaagcgataattgcattgttgtttggtttcnnnnnnnnnnnnn 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||                 
T  17592007 attaattgtactcttttgttttctatataatatatatttgtcattcaaaataaaatgtaagcgagaattgcattgttgtttggtttctttttttcttttt 17591908  T
Q  117 nnaaatgtaaaaatctactaactctgtttcaaattgagtgtcatttatgatttttacacacaaattaagtaatgtaataataatgtcaaagagaaattat 216  Q
      |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17591907 ttaaatgtaaaaatctactaactctgtttcaaattgagtgtcgtttatgatttttacacacaaattaagtaatgtaataataatgtcaaacagaaattat 17591808  T
Q  217 catgtgactaaatctattatataaattgcaaccaggatttcaattggtacaaataaattataatgcaaagagtatggaataaggtacatcgaagtcaaaa 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    |||||||||    
T  17591807 catgtgactaaatctattatataaattgcaaccaggatttcaattggtacaaataaattataatacaaagagtatggaataaggtac----aagtcaaaa 17591712  T
Q  317 ttagtgaaattataaagcctgcaagagagaaattagtattgatccaaaggcttctctgttagaagctgttaccatttgtttgtagaggaatttgagactg 416  Q
     ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17591711 atagtgaaattataaagcctgcaagagagaa---agtattgatccaaaggcttctctgttagaagctgttaccatttgtttgtagaggaatttgagactg 17591615  T
Q  417 cagatcagatgtccgttgagttcat 441  Q
    |||||||||||||||||||||||||    
T  17591614 cagatcagatgtccgttgagttcat 17591590  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 17698376 - 17698292
Alignment:
Q  17 attaattgtactcttttgttttctatataatatatatttgtcattcaaaataaaatgtaagcgataattgca-ttgttgtttggtttc 103  Q
    ||||||||||||| || |||||||||||||||| | ||| ||||||||||||||||||||  |||||||||| |||||||||||||||    
T  17698376 attaattgtactccttcgttttctatataatat-tgtttctcattcaaaataaaatgtaa--gataattgcatttgttgtttggtttc 17698292  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 17737345 - 17737267
Alignment:
Q  18 ttaattgtactcttttgttttctatataatatatatttgtcattcaaaataaaatgtaagcgataattgcattgttgtttg 98  Q
    |||||||||||  || |||||| | |||||||| |||||||||| |||| ||||| |||  | ||||||||||||||||||    
T  17737345 ttaattgtactacttggttttcgacataatatacatttgtcatttaaaagaaaatataa--gttaattgcattgttgtttg 17737267  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 11970424 - 11970360
Alignment:
Q  142 gtttcaaattgagtgtcatttatgatttttacacacaaattaagtaatgtaataataatgtcaaa 206  Q
    |||| ||| ||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||    
T  11970424 gttttaaaatgagtgtcatttaagatttttacacacaaattaagaaatgtaataatgatgtcaaa 11970360  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 44057542 - 44057606
Alignment:
Q  142 gtttcaaattgagtgtcatttatgatttttacacacaaattaagtaatgtaataataatgtcaaa 206  Q
    |||||||| |||||||  |||| ||||||||||||||||||||| ||||||||||| ||||||||    
T  44057542 gtttcaaaatgagtgttgtttaagatttttacacacaaattaagaaatgtaataatgatgtcaaa 44057606  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 39136029 - 39136075
Alignment:
Q  160 tttatgatttttacacacaaattaagtaatgtaataataatgtcaaa 206  Q
    |||| |||||||||||| |||||||| ||||||||||||||||||||    
T  39136029 tttaagatttttacacataaattaagaaatgtaataataatgtcaaa 39136075  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 206
Target Start/End: Original strand, 4088562 - 4088601
Alignment:
Q  167 tttttacacacaaattaagtaatgtaataataatgtcaaa 206  Q
    ||||||||||||||||||| ||||||||||| ||||||||    
T  4088562 tttttacacacaaattaagaaatgtaataatgatgtcaaa 4088601  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 33023785 - 33023861
Alignment:
Q  207 gagaaattatcatgtgactaaatctattatataaattgcaaccaggatttcaattggtacaaataaattataatgcaa 284  Q
    ||||| |||||||||| ||||||| | |||||||||||||||||| |||||| ||| |||| ||| ||||||||||||    
T  33023785 gagaagttatcatgtg-ctaaatccactatataaattgcaaccagaatttcagttgctacatatatattataatgcaa 33023861  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 41178185 - 41178246
Alignment:
Q  145 tcaaattgagtgtcatttatgatttttacacacaaattaagtaatgtaataataatgtcaaa 206  Q
    ||||| || ||||| |||| | ||||||||||||||||||| ||||||||||| ||||||||    
T  41178185 tcaaaatgggtgtcgtttaaggtttttacacacaaattaagaaatgtaataatgatgtcaaa 41178246  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 44194926 - 44194967
Alignment:
Q  165 gatttttacacacaaattaagtaatgtaataataatgtcaaa 206  Q
    ||||||||||||||||||||| ||||||||||| ||||||||    
T  44194926 gatttttacacacaaattaagaaatgtaataatgatgtcaaa 44194967  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 206
Target Start/End: Original strand, 4603219 - 4603258
Alignment:
Q  167 tttttacacacaaattaagtaatgtaataataatgtcaaa 206  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  4603219 tttttatacacaaattaagaaatgtaataataatgtcaaa 4603258  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 54918316 - 54918248
Alignment:
Q  138 ctctgtttcaaattgagtgtcatttatgatttttacacacaaattaagtaatgtaataataatgtcaaa 206  Q
    |||||||||||| ||||| || |||| | |||||||||| |||||||| ||| ||||||| ||||||||    
T  54918316 ctctgtttcaaaatgagtatcgtttaaggtttttacacataaattaagaaatttaataatgatgtcaaa 54918248  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 46160898 - 46160846
Alignment:
Q  142 gtttcaaattgagtgtcatttatgatttttacacacaaattaagtaatgtaat 194  Q
    |||||||| ||| |||| |||| | ||||||||||||||||||| ||||||||    
T  46160898 gtttcaaaatgaatgtcctttaaggtttttacacacaaattaagaaatgtaat 46160846  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 6596708 - 6596644
Alignment:
Q  142 gtttcaaattgagtgtcatttatgatttttacacacaaattaagtaatgtaataataatgtcaaa 206  Q
    |||||||| |||||||  |||| |||||||| |||||||||||| |||||| || ||||||||||    
T  6596708 gtttcaaaatgagtgttgtttaagatttttagacacaaattaagaaatgtactagtaatgtcaaa 6596644  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 18428364 - 18428401
Alignment:
Q  169 tttacacacaaattaagtaatgtaataataatgtcaaa 206  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  18428364 tttacacacaaattaagaaatgtaataatgatgtcaaa 18428401  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 1019033 - 1019096
Alignment:
Q  143 tttcaaattgagtgtcatttatgatttttacacacaaattaagtaatgtaataataatgtcaaa 206  Q
    ||||||| |||||||| |||| | |||||||||||||||| || |||||||||||  |||||||    
T  1019033 tttcaaaatgagtgtcgtttaaggtttttacacacaaatttagaaatgtaataatggtgtcaaa 1019096  T

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