View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18380_low_17 (Length: 398)
Name: NF18380_low_17
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18380_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 7 - 376
Target Start/End: Complemental strand, 47280835 - 47280466
Alignment:
| Q |
7 |
tggagtagcaaaggaacatttggcagcatgtaattcggaataaggagtcccagtttgtttggtctgtggagctgcaccgcaagtttcttgaaactgttaa |
106 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47280835 |
tggaggagctaaggaacatttggcagcatgtaattcggaataaggagtcccagtttgtttggtctgtggagctgcaccgcaagtttcttgaaactgttaa |
47280736 |
T |
|
| Q |
107 |
tcagttaggagttgacagtatgttcttcactctctctgcaacactagaactatttttatatcctatcaatttcctcgagctttaccgaattttatttctc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47280735 |
tcagttaggagttgacagtatgttcttcactctctctgcaacactagaactatttttatatcctatcaatttcctcgagctttaccgaattttatttctc |
47280636 |
T |
|
| Q |
207 |
attttaaactattaaattatttttgaatatctggtttatgttttagtcaagtcatgaagtattccattactgaactcgagtttaagtctaatgttaatgt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47280635 |
attttaaactattaaattatttttgaatatctggtttatgttttagtcaagtcatgaagtattccattactgaactcgagtttaagtctaatgttaatgt |
47280536 |
T |
|
| Q |
307 |
tgttttactggcagaggctgtacccaaaaagatttttgatttgatgaatgttgaaaatattacaagggaa |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47280535 |
tgttttactggcagaggctgtacccaaaaagatttttgatttgatgaatgttgaaaatattacaagggaa |
47280466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 61 - 243
Target Start/End: Complemental strand, 49060699 - 49060519
Alignment:
| Q |
61 |
ttgtttggtctgtggagctgcaccgcaagtttcttgaaactgttaatcagttaggagttgacagtatgttcttcactctctctgcaacactagaactatt |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||| ||||||||| ||| ||| |
|
|
| T |
49060699 |
ttgtttggtctgtggagctgcaccgcaagtttgttgctgctgttaatcagttaggcattgacagtatgttcttcactctgcctgcaacac--aaacaatt |
49060602 |
T |
|
| Q |
161 |
tttatatcctatcaatttcctcgagctttaccgaattttatttctcattttaaactattaaattatttttgaatatctggttt |
243 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||| |||||| | ||| ||| | |||||||||||||||||| |
|
|
| T |
49060601 |
tttatatcttatcaatttcctcgagctttactgaattttatttcaaattttacattatcaaaatgtttttgaatatctggttt |
49060519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 52 - 212
Target Start/End: Complemental strand, 47275075 - 47274917
Alignment:
| Q |
52 |
agtcccagtttgtttggtctgtggagctgcaccgcaagtttcttgaaactgttaatcagttaggagttgacagtatgttcttcactctctctgcaacact |
151 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||| ||| ||| |||||||||||||||| ||||||||||||||| |||||| || ||||||| |
|
|
| T |
47275075 |
agtcccagtctgtttggtctgtggagctgcaccacaaatttgttgctgctgttaatcagttaggcattgacagtatgttctccactctgtccgcaacac- |
47274977 |
T |
|
| Q |
152 |
agaactatttttatatcctatcaatttcctcgagctttaccgaattttatttctcatttta |
212 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
47274976 |
-aaacaatttttatatcctatcaatttcctcgagcttgaccgatttttatttctcatttta |
47274917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 257 - 375
Target Start/End: Complemental strand, 47274801 - 47274685
Alignment:
| Q |
257 |
gtcatgaagtattccattactgaactcgagtttaagtctaatgttaatgttgttttactggcagaggctgtacccaaaaagatttttgatttgatgaatg |
356 |
Q |
| |
|
|||||||||| || |||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||| |
|
|
| T |
47274801 |
gtcatgaagtgtttcattactgaacttgagtg--agtctcatgttaatgttgttttactggcagaggctgtacctgaaaagattcttggtttgatgaatg |
47274704 |
T |
|
| Q |
357 |
ttgaaaatattacaaggga |
375 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
47274703 |
ttgaaaatattacaaggga |
47274685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 303 - 375
Target Start/End: Complemental strand, 49060411 - 49060339
Alignment:
| Q |
303 |
atgttgttttactggcagaggctgtacccaaaaagatttttgatttgatgaatgttgaaaatattacaaggga |
375 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||| ||||| |||||||||| ||||||||||||||||| |
|
|
| T |
49060411 |
atgttgttttacttgcagaggctgtacccaaaaaaattcttgatatgatgaatgtcgaaaatattacaaggga |
49060339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 317 - 376
Target Start/End: Original strand, 2893950 - 2894009
Alignment:
| Q |
317 |
gcagaggctgtacccaaaaagatttttgatttgatgaatgttgaaaatattacaagggaa |
376 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||| | ||||||||| |
|
|
| T |
2893950 |
gcagaggctgtacccaaaaagattcttgaactgatgaatgttgaaaatctgacaagggaa |
2894009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 375
Target Start/End: Original strand, 2889392 - 2889447
Alignment:
| Q |
320 |
gaggctgtacccaaaaagatttttgatttgatgaatgttgaaaatattacaaggga |
375 |
Q |
| |
|
||||||||||| ||||||||| |||| ||||||||||||||||| | |||||||| |
|
|
| T |
2889392 |
gaggctgtaccgaaaaagattcttgaactgatgaatgttgaaaatctgacaaggga |
2889447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 375
Target Start/End: Complemental strand, 48869682 - 48869611
Alignment:
| Q |
304 |
tgttgttttactggcagaggctgtacccaaaaagatttttgatttgatgaatgttgaaaatattacaaggga |
375 |
Q |
| |
|
|||| |||| || ||||| ||| |||| ||||||||| |||| |||||||||||||||||| |||||||||| |
|
|
| T |
48869682 |
tgttattttgcttgcagatgctataccaaaaaagattcttgaattgatgaatgttgaaaatcttacaaggga |
48869611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University