View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18380_low_20 (Length: 367)
Name: NF18380_low_20
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18380_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 96 - 352
Target Start/End: Complemental strand, 34985168 - 34984912
Alignment:
| Q |
96 |
cttaccacatccataagtaattcaactagtttagttggacttatcttaatcaatgccttgtcccgagaagcttcaatctgcaaaccttgttcaaagactt |
195 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34985168 |
cttaccacatccataagtaattcaactagtttagttggacttatcttaatcaatgccttgtcccgagaagcttcaatctgcaaaccttgttcaaaaactt |
34985069 |
T |
|
| Q |
196 |
ccattgtatacattgaattttggtttcgacacaaatcaaaactaggtaaagtttgaagctctccaacttcaaccaacttaacaatctccaataatgttgc |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34985068 |
ccattgtatacattgaattttggtttcgacacaaatcaaaactaggtaaagtttgaagctctccaacttcaaccaacttaacaatctccaataatgttgc |
34984969 |
T |
|
| Q |
296 |
atcaacacagccaaattgtttcaaatattcaaaatcatcgagaatttcgtacctatg |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34984968 |
atcaacacagccaaattgtttcaaatattcaaaatcatcgagaatttcgtacctatg |
34984912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 96 - 352
Target Start/End: Original strand, 27542478 - 27542736
Alignment:
| Q |
96 |
cttaccacatccataagtaattcaactagtttagttggacttatcttaatcaatgccttgtcccgagaagcttcaatctgcaaaccttgttcaaagactt |
195 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| |||| |||| |
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| T |
27542478 |
cttaccacatccataagtatttcaactagtttagttggacttatcttaatcaatgccatgttccgaaaagcttcaatctgcaaaccttgtccaaaaactt |
27542577 |
T |
|
| Q |
196 |
ccattgtatacattgaattttggtttcgacacaaatcaaaactaggtaaagtttgaagctctccaacttcaaccaacttaacaatctccaataatgttgc |
295 |
Q |
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|||||| ||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| || |||||||| ||||||||| |
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| T |
27542578 |
tcattgtgtacattggattttggtttcgacacaaatcaaaactaggtaaagtttaaaattctccaacttcaaccaacctattaatctccattaatgttgc |
27542677 |
T |
|
| Q |
296 |
atcaacacagccaaattgtttcaaatattca--aaatcatcgagaatttcgtacctatg |
352 |
Q |
| |
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|||||| | ||| |||||||||||| |||| | |||||||||||||||||||||||| |
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| T |
27542678 |
atcaacccgaccatattgtttcaaattttcaatatatcatcgagaatttcgtacctatg |
27542736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 96 - 352
Target Start/End: Complemental strand, 27543896 - 27543655
Alignment:
| Q |
96 |
cttaccacatccataagtaattcaactagtttagttggacttatcttaatcaatgccttgtcccgagaagcttcaatctgcaaaccttgttcaaagactt |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||| ||| |||| |||| |
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| T |
27543896 |
cttaccacatccataagtaattcaactagtttagttggacatat---------------gtcctgagaagcttcaatctgcaaaccatgtccaaaaactt |
27543812 |
T |
|
| Q |
196 |
ccattgtatacattgaattttggtttcgacacaaatcaaaactaggtaaagtttgaagctctccaacttcaaccaacttaacaatctccaataatgttgc |
295 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||||||| |
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| T |
27543811 |
ccattgtgtacattggattttggtttcgacacaaatcaaaactaggtaaagtttgaagctctccaactccaagcaacctaacaatctccattaatgttgc |
27543712 |
T |
|
| Q |
296 |
atcaacacagccaaattgtttcaaatattcaaaatcatcgagaatttcgtacctatg |
352 |
Q |
| |
|
|||||| || |||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
27543711 |
atcaacccaaccaaattgtttcaaatattcaatatcatcgagaatttcgtacctatg |
27543655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 96 - 351
Target Start/End: Original strand, 27581371 - 27581624
Alignment:
| Q |
96 |
cttaccacatccataagtaattcaactagtttagttggacttatcttaatcaatgccttgtcccgagaagcttcaatctgcaaaccttgttcaaagactt |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||| || |||||||||| ||||||||| || | |||| |
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| T |
27581371 |
cttaccacatccataagtaattcaactagtttagttggaattatcttaaccaatgccatgtcccacgaggcttcaatctataaaccttgtccagaaactt |
27581470 |
T |
|
| Q |
196 |
ccattgtatacattgaattttggtttcgacacaaatcaaaactaggtaaagtttgaagctctccaacttcaaccaacttaacaatctccaataatgttgc |
295 |
Q |
| |
|
||||||| ||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||| |
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| T |
27581471 |
ccattgtgtacattggattttgatttt--cacaaatcaaaactaggtaaagtttgaagctctccaacttcaaccaacctaataatctccattaatgttgc |
27581568 |
T |
|
| Q |
296 |
atcaacacagccaaattgtttcaaatattcaaaatcatcgagaatttcgtacctat |
351 |
Q |
| |
|
|||||| | |||||||||||||||||||||| ||||| |||||||| |||||||| |
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| T |
27581569 |
atcaacccgaccaaattgtttcaaatattcaatatcatggagaattttgtacctat |
27581624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 96 - 352
Target Start/End: Complemental strand, 27583237 - 27582979
Alignment:
| Q |
96 |
cttaccacatccataagtaattcaactagtttagttggacttatcttaatcaa--tgccttgtcccgagaagcttcaatctgcaaaccttgttcaaagac |
193 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| || ||| |||||||| |||| |||| ||||||||||||||| |||||||||| |||| | |
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|
| T |
27583237 |
cttaccacatccataagtaattcatctagtttagttgaacatatattaatcaacatgccatgtctcgagaagcttcaatcaacaaaccttgtccaaaaat |
27583138 |
T |
|
| Q |
194 |
ttccattgtatacattgaattttggtttcgacacaaatcaaaactaggtaaagtttgaagctctccaacttcaaccaacttaacaatctccaataatgtt |
293 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||| | ||||| |
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| T |
27583137 |
ttccattgtgtacattggattttggtttcgacacaaattaaaactaggtaaagtttgaagctctccaactccaaccaacctaacaatctccattgatgtt |
27583038 |
T |
|
| Q |
294 |
gcatcaacacagccaaattgtttcaaatattcaaaatcatcgagaatttcgtacctatg |
352 |
Q |
| |
|
|||||||| | ||||||||||||||||||| || || |||||||||||||||| |||| |
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|
| T |
27583037 |
gcatcaacccgaccaaattgtttcaaatattaaatattatcgagaatttcgtacttatg |
27582979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 100 - 352
Target Start/End: Complemental strand, 34980717 - 34980465
Alignment:
| Q |
100 |
ccacatccataagtaattcaactagtttagttggacttatcttaatcaatgccttgtcccgagaagcttcaatctgcaaaccttgttcaaagacttccat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||| | ||||||||| |||| |||||| | |
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|
| T |
34980717 |
ccacatccataagtaattcaactagtttagttggtcttatcttaatcaattccatgtcccgagaagcttcaatcggaaaaccttgtccaaaaacttcctt |
34980618 |
T |
|
| Q |
200 |
tgtatacattgaattttggtttcgacacaaatcaaaactaggtaaagtttgaagctctccaacttcaaccaacttaacaatctccaataatgttgcatca |
299 |
Q |
| |
|
||| |||||| |||||| ||||||||||||||||||||||||| ||||| ||| |||||||||||||||| ||||||||| | | ||| | ||||||| |
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|
| T |
34980617 |
tgttgacattggattttgatttcgacacaaatcaaaactaggtatagtttcaagatctccaacttcaaccatcttaacaattgcaattaacgatgcatca |
34980518 |
T |
|
| Q |
300 |
acacagccaaattgtttcaaatattcaaaatcatcgagaatttcgtacctatg |
352 |
Q |
| |
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|| | |||||||||||||||||||| || ||| ||||||||||||||||| |
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|
| T |
34980517 |
acctgactaaattgtttcaaatattcaatataatcaagaatttcgtacctatg |
34980465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 96 - 352
Target Start/End: Complemental strand, 34993123 - 34992867
Alignment:
| Q |
96 |
cttaccacatccataagtaattcaactagtttagttggacttatcttaatcaatgccttgtcccgagaagcttcaatctgcaaaccttgttcaaagactt |
195 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||| ||| |||||||||||||||||||| |||| || | |
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|
| T |
34993123 |
cttaccagatccataagtacttcaactagtttagttggacttatcttaatcaatgccatatcccgtgaaccttcaatctgcaaaccttgtccaaaaacgt |
34993024 |
T |
|
| Q |
196 |
ccattgtatacattgaattttggtttcgacacaaatcaaaactaggtaaagtttgaagctctccaacttcaaccaacttaacaatctccaataatgttgc |
295 |
Q |
| |
|
|| |||| |||||| || |||| |||||||| ||||||||||||| | |||||||| |||||||||||||||| |||||||| ||||| ||||| ||| |
|
|
| T |
34993023 |
cctttgttgacattggatcttggattcgacacgaatcaaaactaggcagtgtttgaagatctccaacttcaaccatcttaacaagctccattaatgatgc |
34992924 |
T |
|
| Q |
296 |
atcaacacagccaaattgtttcaaatattcaaaatcatcgagaatttcgtacctatg |
352 |
Q |
| |
|
|||||| | |||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
34992923 |
atcaacctgactaaattgtttcaaatattcaatattatcgagaatttcgtacctatg |
34992867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 34985244 - 34985201
Alignment:
| Q |
20 |
gattgcactataacaatttagtaaaagtgtatacacaacgtgac |
63 |
Q |
| |
|
|||||||||||||||||| | ||||| ||||||||||||||||| |
|
|
| T |
34985244 |
gattgcactataacaattcactaaaactgtatacacaacgtgac |
34985201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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