View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18380_low_21 (Length: 364)

Name: NF18380_low_21
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18380_low_21
NF18380_low_21
[»] chr1 (3 HSPs)
chr1 (1-351)||(40795639-40795989)
chr1 (3-351)||(41670270-41670618)
chr1 (66-232)||(29391455-29391621)
[»] chr7 (1 HSPs)
chr7 (93-347)||(40180420-40180674)
[»] chr4 (12 HSPs)
chr4 (12-253)||(23402042-23402283)
chr4 (66-250)||(26433995-26434179)
chr4 (12-250)||(23453441-23453679)
chr4 (12-250)||(23885798-23886036)
chr4 (12-250)||(34662110-34662348)
chr4 (12-253)||(23868700-23868941)
chr4 (66-250)||(26832706-26832890)
chr4 (12-247)||(23415778-23416013)
chr4 (66-250)||(26435775-26435959)
chr4 (66-253)||(23408663-23408850)
chr4 (12-250)||(24307194-24307432)
chr4 (66-131)||(23451855-23451920)
[»] chr8 (1 HSPs)
chr8 (99-245)||(29684676-29684822)


Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 40795989 - 40795639
Alignment:
Q  1 tggcaagttcgccaggaagaacgagacgaacagcagtctgaatctcacgagaggtgatggtagggttcttgttgtagcgagcgggtctggatgattcctg 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  40795989 tggcaagttcgccgggaagaacgagacgaacagcagtctgaatctcacgagaggtgatggtaggtttcttgttgtagcgagcgagtctggatgattcctg 40795890  T
Q  101 agcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaag 200  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| || |||||||||||||||||||||||||||||||||    
T  40795889 agcgagcttctcaaagatgtcattgatgaaactgttcatgatccccatagccttgctggagattccaatgtcaggatgaacctgcttgagaaccttgaag 40795790  T
Q  201 atgtagatcttgtaggtttctacgctcttcttgtttctctttttcttcttgtcggcagaggaagcttcctttgggatcttcttctccgctttggttttct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40795789 atgtagatcttgtaggtttctacgctcttcttgtttctctttttcttcttgtcggcagaggaagcttcctttgggatcttcttctccgctttggttttct 40795690  T
Q  301 ctgcgggagctttttctgctggcttcttctcagcgggcttcttctctccct 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40795689 ctgcgggagctttttctgctggcttcttctcagcgggcttcttctctccct 40795639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 3 - 351
Target Start/End: Complemental strand, 41670618 - 41670270
Alignment:
Q  3 gcaagttcgccaggaagaacgagacgaacagcagtctgaatctcacgagaggtgatggtagggttcttgttgtagcgagcgggtctggatgattcctgag 102  Q
    |||||||| || || ||||| ||||||||||||||||| ||||| ||||| ||||| ||||| ||||||||||| |  ||  ||||||| ||||||||||    
T  41670618 gcaagttcaccggggagaacaagacgaacagcagtctgtatctcccgagaagtgattgtaggcttcttgttgtacctcgcaagtctggaagattcctgag 41670519  T
Q  103 cgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagat 202  Q
    ||||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41670518 cgagcttctcaaagatatcattgatgaagctgttcatgatccccatagccttgcttgagataccaatgtcaggatgaacctgcttgagaaccttgaagat 41670419  T
Q  203 gtagatcttgtaggtttctacgctcttcttgtttctctttttcttcttgtcggcagaggaagcttcctttgggatcttcttctccgctttggttttctct 302  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||  ||||| |||||||||||||||||||| || |||||||||||||||    
T  41670418 gtagatcttgtaggtttcaacgctcttcttgtttctcttcttcttcttgtcggtggaggatgcttcctttgggatcttcttttcggctttggttttctct 41670319  T
Q  303 gcgggagctttttctgctggcttcttctcagcgggcttcttctctccct 351  Q
    || || || || ||||||||||||||||| ||||| |||||||||||||    
T  41670318 gctggcgccttctctgctggcttcttctcggcgggtttcttctctccct 41670270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 66 - 232
Target Start/End: Complemental strand, 29391621 - 29391455
Alignment:
Q  66 ttcttgttgtagcgagcgggtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagatac 165  Q
    ||||||||||| |||||   ||| || | |||||||||||| |||||||| || |||||||||||||||||||| || |||||||| |||   || ||||    
T  29391621 ttcttgttgtaacgagccaatctagaagcttcctgagcgagtttctcaaagatatcattgatgaaactgttcataatccccatagctttggaagaaatac 29391522  T
Q  166 cgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttctt 232  Q
    | || |||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||    
T  29391521 ctatatcaggatgaacctgtttgagaaccttgaagatgtaaatcttataggtttcaacgctcttctt 29391455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 93 - 347
Target Start/End: Original strand, 40180420 - 40180674
Alignment:
Q  93 gattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaa 192  Q
    |||||||||||||| |||||||| || || || ||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||| || ||||    
T  40180420 gattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaa 40180519  T
Q  193 ccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttcttgtcggcagaggaagcttcctttgggatcttcttctccgc-tt 291  Q
    ||||||||||||| |||||||||||||| ||||| |||||  ||||||| ||||||||||||     |    ||||||||| ||||||||||||||| ||    
T  40180520 ccttgaagatgtatatcttgtaggtttcaacgcttttcttcgttctcttcttcttcttgtcg---ctgcttccttcctttgagatcttcttctccgcttt 40180616  T
Q  292 tggtt--ttctctgcgggagctttttctgctggcttcttctcagcgggcttcttctct 347  Q
    |||||  ||||| || |||||||| ||||| ||||||||||| ||||| |||||||||    
T  40180617 tggtttcttctcggctggagctttctctgcgggcttcttctccgcgggtttcttctct 40180674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 6e-53; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 23402283 - 23402042
Alignment:
Q  12 ccaggaagaacgagacgaacagcagtctgaatctcacgagaggtgatggtagggttcttgttgtagcgagcgggtctggatgattcctgagcgagcttct 111  Q
    ||||||||||| || |  || ||||||||||| || |  || ||||| || || ||||||||||| |||||  ||||||||||||| ||||| |||||||    
T  23402283 ccaggaagaacaagcctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttct 23402184  T
Q  112 caaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatctt 211  Q
    | || || ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| ||||| |||||||||||||||||    
T  23402183 cgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatctt 23402084  T
Q  212 gtaggtttctacgctcttcttgtttctctttttcttcttgtc 253  Q
    ||| ||||||||  |||||||  ||||||| |||||||||||    
T  23402083 gtatgtttctacattcttcttacttctcttcttcttcttgtc 23402042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 66 - 250
Target Start/End: Complemental strand, 26434179 - 26433995
Alignment:
Q  66 ttcttgttgtagcgagcgggtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagatac 165  Q
    ||||||||||| |||||  ||||||||||||| |||||||| ||||| || || ||||||||||||||||||||||| ||||| || |||||||||||||    
T  26434179 ttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagatac 26434080  T
Q  166 cgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttctt 250  Q
    | ||||| |||||||| || || |||||||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||||||    
T  26434079 caatgtctggatgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaacgctcttcttgcttctcttcttcttctt 26433995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 23453441 - 23453679
Alignment:
Q  12 ccaggaagaacgagacgaacagcagtctgaatctcacgagaggtgatggtagggttcttgttgtagcgagcgggtctggatgattcctgagcgagcttct 111  Q
    ||||||||||| ||||  || ||||||||||| || |  || ||||| || || ||||||||||| |||||  ||||||||||||| ||||| |||||||    
T  23453441 ccaggaagaacaagactgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttct 23453540  T
Q  112 caaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatctt 211  Q
    | || || ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| || ||||| || || ||||| |||||||||||||||||    
T  23453541 cgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacatgattcagaactttgaagatgtagatctt 23453640  T
Q  212 gtaggtttctacgctcttcttgtttctctttttcttctt 250  Q
    ||| ||||||||  |||||||| ||||||| ||||||||    
T  23453641 gtatgtttctacattcttcttgcttctcttcttcttctt 23453679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 23886036 - 23885798
Alignment:
Q  12 ccaggaagaacgagacgaacagcagtctgaatctcacgagaggtgatggtagggttcttgttgtagcgagcgggtctggatgattcctgagcgagcttct 111  Q
    ||||||||||| || |  || ||||||||||| || |  || ||||| || || ||||||||||| |||||  ||||||||||||| ||||| |||||||    
T  23886036 ccaggaagaacaagcctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttct 23885937  T
Q  112 caaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatctt 211  Q
    | || || ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| ||||| |||||||||||||||||    
T  23885936 cgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatctt 23885837  T
Q  212 gtaggtttctacgctcttcttgtttctctttttcttctt 250  Q
    ||| ||||| ||  |||||||| ||||||| ||||||||    
T  23885836 gtatgtttcaacattcttcttgcttctcttcttcttctt 23885798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 34662110 - 34662348
Alignment:
Q  12 ccaggaagaacgagacgaacagcagtctgaatctcacgagaggtgatggtagggttcttgttgtagcgagcgggtctggatgattcctgagcgagcttct 111  Q
    ||||||||||| || | ||||||||||||||| || |  || || || || || |||||||| || |  ||  ||||||| ||||| |||||||||||||    
T  34662110 ccaggaagaacaagcctaacagcagtctgaatttccctcgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttct 34662209  T
Q  112 caaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatctt 211  Q
    | || || |||||||||||||||||||| || ||||| || |||||||||||||| |||||||| ||||| || || |||||||||||||||||||||||    
T  34662210 cgaagatatcattgatgaaactgttcataatacccatggctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatctt 34662309  T
Q  212 gtaggtttctacgctcttcttgtttctctttttcttctt 250  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  34662310 gtaggtttcaacgctcttcttgtttctcttcttcttctt 34662348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 23868941 - 23868700
Alignment:
Q  12 ccaggaagaacgagacgaacagcagtctgaatctcacgagaggtgatggtagggttcttgttgtagcgagcgggtctggatgattcctgagcgagcttct 111  Q
    ||||||||||| || |  |||||||||||||| || |  || ||||| || || ||||||||||| |||||  ||||||||||||| ||||| || ||||    
T  23868941 ccaggaagaacaagtctgacagcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagtttct 23868842  T
Q  112 caaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatctt 211  Q
    | || || |||||||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||||||||| ||||| |||||||||||||||||    
T  23868841 cgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatctt 23868742  T
Q  212 gtaggtttctacgctcttcttgtttctctttttcttcttgtc 253  Q
    ||| ||||| ||  |||||||| ||||||| |||||||||||    
T  23868741 gtatgtttcaacattcttcttgcttctcttcttcttcttgtc 23868700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 66 - 250
Target Start/End: Complemental strand, 26832890 - 26832706
Alignment:
Q  66 ttcttgttgtagcgagcgggtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagatac 165  Q
    ||||||||||| |||||  ||||||||||||| |||||||| ||||| || || ||||||||||||||||||||||| ||||| || |||||||||||||    
T  26832890 ttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagatac 26832791  T
Q  166 cgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttctt 250  Q
    | ||||| || ||||| || || |||||||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||||||    
T  26832790 caatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaacgctcttcttgcttctcttcttcttctt 26832706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 12 - 247
Target Start/End: Original strand, 23415778 - 23416013
Alignment:
Q  12 ccaggaagaacgagacgaacagcagtctgaatctcacgagaggtgatggtagggttcttgttgtagcgagcgggtctggatgattcctgagcgagcttct 111  Q
    ||||||||||| || |  || ||||||||||| || |  || ||||| || || ||||||||||| |||||  ||||||||||||| ||||| |||||||    
T  23415778 ccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttct 23415877  T
Q  112 caaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatctt 211  Q
    | || || ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| ||||| |||||||||||||||||    
T  23415878 cgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatctt 23415977  T
Q  212 gtaggtttctacgctcttcttgtttctctttttctt 247  Q
    ||| ||||| ||  |||||||| ||||||| |||||    
T  23415978 gtatgtttcaacattcttcttgcttctcttcttctt 23416013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 66 - 250
Target Start/End: Complemental strand, 26435959 - 26435775
Alignment:
Q  66 ttcttgttgtagcgagcgggtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagatac 165  Q
    ||||||||||| |||||  ||||||| ||||| |||| ||| ||||| || || ||||||||||||||||||||||| ||||| || |||||||||||||    
T  26435959 ttcttgttgtaacgagcaagtctggaagattcttgagtgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagatac 26435860  T
Q  166 cgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttctt 250  Q
    | ||||| || ||||| || || |||||||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||||||    
T  26435859 caatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaacgctcttcttgcttctcttcttcttctt 26435775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 66 - 253
Target Start/End: Original strand, 23408663 - 23408850
Alignment:
Q  66 ttcttgttgtagcgagcgggtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagatac 165  Q
    ||||||||||| |||||  ||||||||||||| ||||| |||||||| || || ||||||||||||||||||||||| ||||| || |||||||||||||    
T  23408663 ttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatcgctttgcttgagatac 23408762  T
Q  166 cgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttcttgtc 253  Q
    | ||||| || ||||| || || ||||| |||||||||||||||||||| ||||||||  |||||||  ||||||| |||||||||||    
T  23408763 caatgtctgggtgaacttgtttcagaactttgaagatgtagatcttgtatgtttctacattcttcttacttctcttcttcttcttgtc 23408850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 24307432 - 24307194
Alignment:
Q  12 ccaggaagaacgagacgaacagcagtctgaatctcacgagaggtgatggtagggttcttgttgtagcgagcgggtctggatgattcctgagcgagcttct 111  Q
    ||||||||||| || |  |||||||||||||| || |  || ||||| || || ||||||||||| |||||  ||||||||||||| ||||| || ||||    
T  24307432 ccaggaagaacaagtctgacagcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagctagtttct 24307333  T
Q  112 caaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatctt 211  Q
    | || || |||||||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||| || || |||||||||||||| ||||||||    
T  24307332 cgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatatagatctt 24307233  T
Q  212 gtaggtttctacgctcttcttgtttctctttttcttctt 250  Q
    ||| ||||| ||  |||||||| ||||||| ||||||||    
T  24307232 gtatgtttcaacattcttcttgcttctcttcttcttctt 24307194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 23451855 - 23451920
Alignment:
Q  66 ttcttgttgtagcgagcgggtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaa 131  Q
    |||||||||||||||||  |||||||  |||| ||||||||||||||||| || || |||||||||    
T  23451855 ttcttgttgtagcgagcaagtctggagtattcttgagcgagcttctcaaagatatcgttgatgaaa 23451920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 99 - 245
Target Start/End: Complemental strand, 29684822 - 29684676
Alignment:
Q  99 tgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttga 198  Q
    |||||||| |||| ||| || || || | ||||||||| || | ||||||||| || ||||| | ||| ||| |||||||||| || |||||||||||||    
T  29684822 tgagcgagtttcttaaagatatcgttcacgaaactgttaataactcccatagctttacttgaaacaccaatggcaggatgaacttgtttgagaaccttga 29684723  T
Q  199 agatgtagatcttgtaggtttctacgctcttcttgtttctctttttc 245  Q
    | || || |||||||||||||| | ||| |||||   ||||||||||    
T  29684722 atatatatatcttgtaggtttcaatgcttttctttgatctctttttc 29684676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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