View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18380_low_22 (Length: 362)

Name: NF18380_low_22
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18380_low_22
NF18380_low_22
[»] chr1 (12 HSPs)
chr1 (10-346)||(52064064-52064400)
chr1 (308-346)||(3559859-3559897)
chr1 (317-346)||(18404690-18404719)
chr1 (317-346)||(20304924-20304953)
chr1 (317-346)||(36966502-36966531)
chr1 (317-346)||(41876236-41876265)
chr1 (317-346)||(51737747-51737776)
chr1 (318-346)||(6883729-6883757)
chr1 (318-346)||(25463918-25463946)
chr1 (318-346)||(25973649-25973677)
chr1 (317-345)||(33786425-33786453)
chr1 (318-346)||(37821629-37821657)
[»] chr5 (10 HSPs)
chr5 (310-346)||(3521794-3521830)
chr5 (307-346)||(4892444-4892483)
chr5 (315-345)||(17545474-17545504)
chr5 (316-346)||(37321586-37321616)
chr5 (309-346)||(2477878-2477915)
chr5 (317-346)||(25398480-25398509)
chr5 (318-346)||(6043307-6043335)
chr5 (318-346)||(8145615-8145643)
chr5 (318-346)||(33584124-33584152)
chr5 (318-346)||(38899520-38899548)
[»] chr8 (16 HSPs)
chr8 (314-346)||(26041904-26041936)
chr8 (315-346)||(1503635-1503666)
chr8 (315-346)||(15187802-15187833)
chr8 (315-346)||(40779921-40779952)
chr8 (316-346)||(32064988-32065018)
chr8 (316-346)||(37985849-37985879)
chr8 (317-346)||(1645758-1645787)
chr8 (318-346)||(3596836-3596864)
chr8 (318-346)||(6108028-6108056)
chr8 (317-345)||(7017652-7017680)
chr8 (318-346)||(10044590-10044618)
chr8 (318-346)||(17841645-17841673)
chr8 (318-346)||(25581034-25581062)
chr8 (317-345)||(31347570-31347598)
chr8 (314-346)||(38017175-38017207)
chr8 (318-346)||(42754837-42754865)
[»] chr4 (14 HSPs)
chr4 (315-346)||(10442579-10442610)
chr4 (315-346)||(44893005-44893036)
chr4 (316-346)||(21802113-21802143)
chr4 (317-346)||(11314045-11314074)
chr4 (317-346)||(22199501-22199530)
chr4 (317-346)||(31078613-31078642)
chr4 (310-346)||(44893668-44893705)
chr4 (317-346)||(46442086-46442115)
chr4 (317-346)||(47290308-47290337)
chr4 (317-346)||(53123273-53123302)
chr4 (318-346)||(25063369-25063397)
chr4 (318-346)||(33530479-33530507)
chr4 (318-346)||(36073591-36073619)
chr4 (314-346)||(50156370-50156402)
[»] chr7 (10 HSPs)
chr7 (315-345)||(15238627-15238657)
chr7 (316-346)||(35445639-35445669)
chr7 (316-346)||(42612053-42612083)
chr7 (316-346)||(48880720-48880750)
chr7 (317-346)||(3962220-3962249)
chr7 (317-346)||(15577641-15577670)
chr7 (318-346)||(24395213-24395241)
chr7 (318-346)||(25167651-25167679)
chr7 (318-346)||(35876486-35876514)
chr7 (314-346)||(45637953-45637985)
[»] chr6 (9 HSPs)
chr6 (312-346)||(33696939-33696973)
chr6 (317-346)||(17705263-17705292)
chr6 (317-346)||(28675390-28675419)
chr6 (317-346)||(29693688-29693717)
chr6 (317-346)||(32702447-32702476)
chr6 (318-346)||(17175816-17175844)
chr6 (318-346)||(18365369-18365397)
chr6 (318-346)||(18370633-18370661)
chr6 (318-346)||(33695121-33695149)
[»] chr2 (10 HSPs)
chr2 (317-347)||(34320962-34320992)
chr2 (317-346)||(13355090-13355119)
chr2 (317-346)||(22592955-22592984)
chr2 (316-345)||(43331155-43331184)
chr2 (318-346)||(7475303-7475331)
chr2 (318-346)||(9293370-9293398)
chr2 (318-346)||(10662130-10662158)
chr2 (318-346)||(23267857-23267885)
chr2 (318-346)||(33380449-33380477)
chr2 (318-346)||(35161001-35161029)
[»] scaffold0228 (2 HSPs)
scaffold0228 (317-346)||(16226-16255)
scaffold0228 (317-346)||(26178-26207)
[»] chr3 (16 HSPs)
chr3 (317-346)||(3137208-3137237)
chr3 (317-346)||(3456306-3456335)
chr3 (317-346)||(6042119-6042148)
chr3 (312-345)||(8361828-8361861)
chr3 (317-346)||(22426139-22426168)
chr3 (317-346)||(33114036-33114065)
chr3 (317-346)||(34482682-34482711)
chr3 (317-346)||(36864826-36864855)
chr3 (317-346)||(37216847-37216876)
chr3 (317-346)||(40328074-40328103)
chr3 (316-345)||(41224477-41224506)
chr3 (317-346)||(48161148-48161177)
chr3 (318-346)||(3089661-3089689)
chr3 (318-346)||(3574321-3574349)
chr3 (318-346)||(19650695-19650723)
chr3 (318-346)||(37522295-37522323)
[»] scaffold0204 (1 HSPs)
scaffold0204 (318-346)||(4638-4666)
[»] scaffold0096 (1 HSPs)
scaffold0096 (318-346)||(41252-41280)
[»] scaffold0085 (1 HSPs)
scaffold0085 (318-346)||(48091-48119)


Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 10 - 346
Target Start/End: Original strand, 52064064 - 52064400
Alignment:
Q  10 aaatgaacacctagcagctcgtttatgaaaaaattttgatcgagaaatcagcatagtaatgaaatggttgaaggtgtttaactgatatatttataaaagg 109  Q
    |||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52064064 aaatgaacacctagcagctcgtttatgaaggaattttgattgagaaatcagcatagtaatgaaatggttgaaggtgtttaactgatatatttataaaagg 52064163  T
Q  110 gttcatacctatgcattcctgattttattcttctttcaaaacatgttcagttgtaaaccagagtataaagttttcaactcataagaatgcattttaatat 209  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52064164 gttcatacctatgaattcctgattttattcttctttcaaaacatgttcagttgtaaaccagagtataaagttttcaactcataagaatgcattttaatat 52064263  T
Q  210 taactttatttgagtatatcattctaacatttactcccatttatcattttagatagaaagatattgacttcaacaaaatatcccaagcgcagtcgcacat 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  52064264 taactttatttgagtatatcattctaacatttactcccatttatcattttagatagaaagatattgacttcaacaaaatatcccaaacacagtcgcacat 52064363  T
Q  310 ttaatttaggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||| |||||||||||||||||| |||||||||    
T  52064364 ttaatttaagaaaatgctagatatcaaaaatgatttt 52064400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 346
Target Start/End: Complemental strand, 3559897 - 3559859
Alignment:
Q  308 atttaatttaggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  3559897 atttaatttgggaaaatgctagatatcaagaatgatttt 3559859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 18404719 - 18404690
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  18404719 aggaaaatgctagatatcaagaatgatttt 18404690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Original strand, 20304924 - 20304953
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  20304924 aggaaaatgctagatatcaagaatgatttt 20304953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Original strand, 36966502 - 36966531
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  36966502 aggaaaatgctagatatcaagaatgatttt 36966531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Original strand, 41876236 - 41876265
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  41876236 aggaaaatgctagatatcaagaatgatttt 41876265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 51737776 - 51737747
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  51737776 aggaaaatgctagatatcaagaatgatttt 51737747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Complemental strand, 6883757 - 6883729
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  6883757 ggaaaatgctagatatcaagaatgatttt 6883729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Complemental strand, 25463946 - 25463918
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  25463946 ggaaaatgctagatatcaagaatgatttt 25463918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Complemental strand, 25973677 - 25973649
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  25973677 ggaaaatgctagatatcaagaatgatttt 25973649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 345
Target Start/End: Original strand, 33786425 - 33786453
Alignment:
Q  317 aggaaaatgctagatatcaagaatgattt 345  Q
    |||||||||||||||||||||||||||||    
T  33786425 aggaaaatgctagatatcaagaatgattt 33786453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Original strand, 37821629 - 37821657
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  37821629 ggaaaatgctagatatcaagaatgatttt 37821657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 310 - 346
Target Start/End: Original strand, 3521794 - 3521830
Alignment:
Q  310 ttaatttaggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||||||||||    
T  3521794 ttaatttaggaaaatgctagatatcaagaatgatttt 3521830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 346
Target Start/End: Complemental strand, 4892483 - 4892444
Alignment:
Q  307 catttaatttaggaaaatgctagatatcaagaatgatttt 346  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  4892483 catttattctaggaaaatgctagatatcaagaatgatttt 4892444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 345
Target Start/End: Original strand, 17545474 - 17545504
Alignment:
Q  315 ttaggaaaatgctagatatcaagaatgattt 345  Q
    |||||||||||||||||||||||||||||||    
T  17545474 ttaggaaaatgctagatatcaagaatgattt 17545504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 346
Target Start/End: Original strand, 37321586 - 37321616
Alignment:
Q  316 taggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||||    
T  37321586 taggaaaatgctagatatcaagaatgatttt 37321616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 346
Target Start/End: Complemental strand, 2477915 - 2477878
Alignment:
Q  309 tttaatttaggaaaatgctagatatcaagaatgatttt 346  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  2477915 tttatttttggaaaatgctagatatcaagaatgatttt 2477878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 25398509 - 25398480
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  25398509 aggaaaatgctagatatcaagaatgatttt 25398480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Original strand, 6043307 - 6043335
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  6043307 ggaaaatgctagatatcaagaatgatttt 6043335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Complemental strand, 8145643 - 8145615
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  8145643 ggaaaatgctagatatcaagaatgatttt 8145615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Original strand, 33584124 - 33584152
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  33584124 ggaaaatgctagatatcaagaatgatttt 33584152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Original strand, 38899520 - 38899548
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  38899520 ggaaaatgctagatatcaagaatgatttt 38899548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 346
Target Start/End: Original strand, 26041904 - 26041936
Alignment:
Q  314 tttaggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||||||    
T  26041904 tttaggaaaatgctagatatcaagaatgatttt 26041936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 346
Target Start/End: Original strand, 1503635 - 1503666
Alignment:
Q  315 ttaggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||||    
T  1503635 ttaggaaaatgctagatatcaagaatgatttt 1503666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 346
Target Start/End: Complemental strand, 15187833 - 15187802
Alignment:
Q  315 ttaggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||||    
T  15187833 ttaggaaaatgctagatatcaagaatgatttt 15187802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 346
Target Start/End: Original strand, 40779921 - 40779952
Alignment:
Q  315 ttaggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||||    
T  40779921 ttaggaaaatgctagatatcaagaatgatttt 40779952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 346
Target Start/End: Complemental strand, 32065018 - 32064988
Alignment:
Q  316 taggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||||    
T  32065018 taggaaaatgctagatatcaagaatgatttt 32064988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 346
Target Start/End: Original strand, 37985849 - 37985879
Alignment:
Q  316 taggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||||    
T  37985849 taggaaaatgctagatatcaagaatgatttt 37985879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Original strand, 1645758 - 1645787
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  1645758 aggaaaatgctagatatcaagaatgatttt 1645787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Original strand, 3596836 - 3596864
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  3596836 ggaaaatgctagatatcaagaatgatttt 3596864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Original strand, 6108028 - 6108056
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  6108028 ggaaaatgctagatatcaagaatgatttt 6108056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 345
Target Start/End: Original strand, 7017652 - 7017680
Alignment:
Q  317 aggaaaatgctagatatcaagaatgattt 345  Q
    |||||||||||||||||||||||||||||    
T  7017652 aggaaaatgctagatatcaagaatgattt 7017680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Complemental strand, 10044618 - 10044590
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  10044618 ggaaaatgctagatatcaagaatgatttt 10044590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Original strand, 17841645 - 17841673
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  17841645 ggaaaatgctagatatcaagaatgatttt 17841673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Original strand, 25581034 - 25581062
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  25581034 ggaaaatgctagatatcaagaatgatttt 25581062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 345
Target Start/End: Original strand, 31347570 - 31347598
Alignment:
Q  317 aggaaaatgctagatatcaagaatgattt 345  Q
    |||||||||||||||||||||||||||||    
T  31347570 aggaaaatgctagatatcaagaatgattt 31347598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 346
Target Start/End: Complemental strand, 38017207 - 38017175
Alignment:
Q  314 tttaggaaaatgctagatatcaagaatgatttt 346  Q
    ||||| |||||||||||||||||||||||||||    
T  38017207 tttagaaaaatgctagatatcaagaatgatttt 38017175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Original strand, 42754837 - 42754865
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  42754837 ggaaaatgctagatatcaagaatgatttt 42754865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 346
Target Start/End: Original strand, 10442579 - 10442610
Alignment:
Q  315 ttaggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||||    
T  10442579 ttaggaaaatgctagatatcaagaatgatttt 10442610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 346
Target Start/End: Original strand, 44893005 - 44893036
Alignment:
Q  315 ttaggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||||    
T  44893005 ttaggaaaatgctagatatcaagaatgatttt 44893036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 346
Target Start/End: Original strand, 21802113 - 21802143
Alignment:
Q  316 taggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||||    
T  21802113 taggaaaatgctagatatcaagaatgatttt 21802143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Original strand, 11314045 - 11314074
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  11314045 aggaaaatgctagatatcaagaatgatttt 11314074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 22199530 - 22199501
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  22199530 aggaaaatgctagatatcaagaatgatttt 22199501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Original strand, 31078613 - 31078642
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  31078613 aggaaaatgctagatatcaagaatgatttt 31078642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 346
Target Start/End: Complemental strand, 44893705 - 44893668
Alignment:
Q  310 ttaattta-ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||| |||||||||||||||||||||||||||||    
T  44893705 ttaatttatggaaaatgctagatatcaagaatgatttt 44893668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 46442115 - 46442086
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  46442115 aggaaaatgctagatatcaagaatgatttt 46442086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 47290337 - 47290308
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  47290337 aggaaaatgctagatatcaagaatgatttt 47290308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 53123302 - 53123273
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  53123302 aggaaaatgctagatatcaagaatgatttt 53123273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Original strand, 25063369 - 25063397
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  25063369 ggaaaatgctagatatcaagaatgatttt 25063397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Original strand, 33530479 - 33530507
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  33530479 ggaaaatgctagatatcaagaatgatttt 33530507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Complemental strand, 36073619 - 36073591
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  36073619 ggaaaatgctagatatcaagaatgatttt 36073591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 346
Target Start/End: Original strand, 50156370 - 50156402
Alignment:
Q  314 tttaggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||| ||||||||||||||||||||    
T  50156370 tttaggaaaatgttagatatcaagaatgatttt 50156402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 345
Target Start/End: Complemental strand, 15238657 - 15238627
Alignment:
Q  315 ttaggaaaatgctagatatcaagaatgattt 345  Q
    |||||||||||||||||||||||||||||||    
T  15238657 ttaggaaaatgctagatatcaagaatgattt 15238627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 346
Target Start/End: Complemental strand, 35445669 - 35445639
Alignment:
Q  316 taggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||||    
T  35445669 taggaaaatgctagatatcaagaatgatttt 35445639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 346
Target Start/End: Complemental strand, 42612083 - 42612053
Alignment:
Q  316 taggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||||    
T  42612083 taggaaaatgctagatatcaagaatgatttt 42612053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 346
Target Start/End: Original strand, 48880720 - 48880750
Alignment:
Q  316 taggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||||    
T  48880720 taggaaaatgctagatatcaagaatgatttt 48880750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 3962249 - 3962220
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  3962249 aggaaaatgctagatatcaagaatgatttt 3962220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Original strand, 15577641 - 15577670
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  15577641 aggaaaatgctagatatcaagaatgatttt 15577670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Complemental strand, 24395241 - 24395213
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  24395241 ggaaaatgctagatatcaagaatgatttt 24395213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Original strand, 25167651 - 25167679
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  25167651 ggaaaatgctagatatcaagaatgatttt 25167679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Complemental strand, 35876514 - 35876486
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  35876514 ggaaaatgctagatatcaagaatgatttt 35876486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 346
Target Start/End: Complemental strand, 45637985 - 45637953
Alignment:
Q  314 tttaggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||| ||||||||||||    
T  45637985 tttaggaaaatgctagatattaagaatgatttt 45637953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 346
Target Start/End: Complemental strand, 33696973 - 33696939
Alignment:
Q  312 aatttaggaaaatgctagatatcaagaatgatttt 346  Q
    |||| ||||||||||||||||||||||||||||||    
T  33696973 aattaaggaaaatgctagatatcaagaatgatttt 33696939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Original strand, 17705263 - 17705292
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  17705263 aggaaaatgctagatatcaagaatgatttt 17705292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 28675419 - 28675390
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  28675419 aggaaaatgctagatatcaagaatgatttt 28675390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 29693717 - 29693688
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  29693717 aggaaaatgctagatatcaagaatgatttt 29693688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 32702476 - 32702447
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  32702476 aggaaaatgctagatatcaagaatgatttt 32702447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Original strand, 17175816 - 17175844
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  17175816 ggaaaatgctagatatcaagaatgatttt 17175844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Original strand, 18365369 - 18365397
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  18365369 ggaaaatgctagatatcaagaatgatttt 18365397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Original strand, 18370633 - 18370661
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  18370633 ggaaaatgctagatatcaagaatgatttt 18370661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Original strand, 33695121 - 33695149
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  33695121 ggaaaatgctagatatcaagaatgatttt 33695149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 347
Target Start/End: Original strand, 34320962 - 34320992
Alignment:
Q  317 aggaaaatgctagatatcaagaatgattttt 347  Q
    |||||||||||||||||||||||||||||||    
T  34320962 aggaaaatgctagatatcaagaatgattttt 34320992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 13355119 - 13355090
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  13355119 aggaaaatgctagatatcaagaatgatttt 13355090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 22592984 - 22592955
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  22592984 aggaaaatgctagatatcaagaatgatttt 22592955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 345
Target Start/End: Complemental strand, 43331184 - 43331155
Alignment:
Q  316 taggaaaatgctagatatcaagaatgattt 345  Q
    ||||||||||||||||||||||||||||||    
T  43331184 taggaaaatgctagatatcaagaatgattt 43331155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Original strand, 7475303 - 7475331
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  7475303 ggaaaatgctagatatcaagaatgatttt 7475331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Original strand, 9293370 - 9293398
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  9293370 ggaaaatgctagatatcaagaatgatttt 9293398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Complemental strand, 10662158 - 10662130
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  10662158 ggaaaatgctagatatcaagaatgatttt 10662130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Original strand, 23267857 - 23267885
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  23267857 ggaaaatgctagatatcaagaatgatttt 23267885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Complemental strand, 33380477 - 33380449
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  33380477 ggaaaatgctagatatcaagaatgatttt 33380449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Complemental strand, 35161029 - 35161001
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  35161029 ggaaaatgctagatatcaagaatgatttt 35161001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 16255 - 16226
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  16255 aggaaaatgctagatatcaagaatgatttt 16226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 26207 - 26178
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  26207 aggaaaatgctagatatcaagaatgatttt 26178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Original strand, 3137208 - 3137237
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  3137208 aggaaaatgctagatatcaagaatgatttt 3137237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 3456335 - 3456306
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  3456335 aggaaaatgctagatatcaagaatgatttt 3456306  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 6042148 - 6042119
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  6042148 aggaaaatgctagatatcaagaatgatttt 6042119  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 345
Target Start/End: Original strand, 8361828 - 8361861
Alignment:
Q  312 aatttaggaaaatgctagatatcaagaatgattt 345  Q
    |||| |||||||||||||||||||||||||||||    
T  8361828 aattaaggaaaatgctagatatcaagaatgattt 8361861  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Original strand, 22426139 - 22426168
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  22426139 aggaaaatgctagatatcaagaatgatttt 22426168  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 33114065 - 33114036
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  33114065 aggaaaatgctagatatcaagaatgatttt 33114036  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Original strand, 34482682 - 34482711
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  34482682 aggaaaatgctagatatcaagaatgatttt 34482711  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Original strand, 36864826 - 36864855
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  36864826 aggaaaatgctagatatcaagaatgatttt 36864855  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Original strand, 37216847 - 37216876
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  37216847 aggaaaatgctagatatcaagaatgatttt 37216876  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 40328103 - 40328074
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  40328103 aggaaaatgctagatatcaagaatgatttt 40328074  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 345
Target Start/End: Complemental strand, 41224506 - 41224477
Alignment:
Q  316 taggaaaatgctagatatcaagaatgattt 345  Q
    ||||||||||||||||||||||||||||||    
T  41224506 taggaaaatgctagatatcaagaatgattt 41224477  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 48161177 - 48161148
Alignment:
Q  317 aggaaaatgctagatatcaagaatgatttt 346  Q
    ||||||||||||||||||||||||||||||    
T  48161177 aggaaaatgctagatatcaagaatgatttt 48161148  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Complemental strand, 3089689 - 3089661
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  3089689 ggaaaatgctagatatcaagaatgatttt 3089661  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Original strand, 3574321 - 3574349
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  3574321 ggaaaatgctagatatcaagaatgatttt 3574349  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Original strand, 19650695 - 19650723
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  19650695 ggaaaatgctagatatcaagaatgatttt 19650723  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Complemental strand, 37522323 - 37522295
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  37522323 ggaaaatgctagatatcaagaatgatttt 37522295  T

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Target: scaffold0204 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Complemental strand, 4666 - 4638
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  4666 ggaaaatgctagatatcaagaatgatttt 4638  T

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Target: scaffold0096 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Complemental strand, 41280 - 41252
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  41280 ggaaaatgctagatatcaagaatgatttt 41252  T

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Target: scaffold0085 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Complemental strand, 48119 - 48091
Alignment:
Q  318 ggaaaatgctagatatcaagaatgatttt 346  Q
    |||||||||||||||||||||||||||||    
T  48119 ggaaaatgctagatatcaagaatgatttt 48091  T

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