View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18380_low_25 (Length: 344)
Name: NF18380_low_25
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18380_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 30242343 - 30242655
Alignment:
| Q |
19 |
cttaaaccatagatgaaatataaaactttttctcttagcatgaagtttctttcgataaagaaaacggtgaaactaactaaccaacttgaaaacaaacggc |
118 |
Q |
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| T |
30242343 |
cttaaaccatagatgaaatataaaactttttctcttagcatgaagtttctttcgataaagaaaacggtgaaactaactaaccaacttgaaaacaaacggc |
30242442 |
T |
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| Q |
119 |
cactaaatgttaccattgccattaaacaccatctccaaacctctaaccctaataaatgcatgtttgttattcctcttattgtgacagaacaaaccaaaca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30242443 |
cactaaatgttaccattgccattaaacaccatctccaaacctctaaccctaataaatgcatgtttgttattcctcttattgtgacagaacaaaccaaaca |
30242542 |
T |
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| Q |
219 |
tgttaatatgtttagaaatagtatccattcaaaaacaagtctccactttactttaaannnnnnnnnnnngttgcgtgacttcgaatcacgcaaaacctct |
318 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
30242543 |
tgttaatatgtttagaaataatatccattcaaaaacaagtctccactttactttaaattttttctttttgttgtgtgacttcgaatcacgcaaaacctct |
30242642 |
T |
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| Q |
319 |
tcatcctcatcct |
331 |
Q |
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|| |||||||||| |
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| T |
30242643 |
tcgtcctcatcct |
30242655 |
T |
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