View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18380_low_28 (Length: 326)
Name: NF18380_low_28
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18380_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 217 - 311
Target Start/End: Original strand, 19883815 - 19883909
Alignment:
| Q |
217 |
actaaagacaaaaagtgagaaagaatatagcttttgcttaagcttaagtttcactcaacattgaacatattgcactttgcttttgtcacatatat |
311 |
Q |
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| T |
19883815 |
actaaagacaaaaagtgagaaaggatgtaacttttgcttaagcttaagtttcactcaacactgaacatattgcactttgcttttgtcacgtatat |
19883909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 178 - 309
Target Start/End: Complemental strand, 20096934 - 20096799
Alignment:
| Q |
178 |
caaggccatgagaaacacgacgggata----gccttataataaactaaagacaaaaagtgagaaagaatatagcttttgcttaagcttaagtttcactca |
273 |
Q |
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| T |
20096934 |
caaggccatgagaaacacgacgagatacgaagccttataatgctaaagagacaaaaggtgagaaagaatatagcttttgcttaagcttaagtttcactca |
20096835 |
T |
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| Q |
274 |
acattgaacatattgcactttgcttttgtcacatat |
309 |
Q |
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| T |
20096834 |
gcactgaacattttgcactttgcttttgtcatatat |
20096799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 20125267 - 20125136
Alignment:
| Q |
14 |
atatcaaaactaa-ttatacatctttgaaatcact-tttgctgatccaaaagtaaaaccaaacatagacaatatgtgaaaacttatccaaccataaatcg |
111 |
Q |
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| T |
20125267 |
atatcaaaactaaattagacatctttcaaatcactctttgctgatctgaaagtgaaaccaaacatagacaatatgtgaaaa-ttttccaaccataaatct |
20125169 |
T |
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| Q |
112 |
taatattgctt---atagatcaaataaagattg |
141 |
Q |
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| T |
20125168 |
taatattgcttccaatagatcaaataaatattg |
20125136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 121
Target Start/End: Original strand, 19883692 - 19883773
Alignment:
| Q |
40 |
aaatcacttttgctgatccaaaagtaaaaccaaacatagacaatatgtgaaaacttatccaaccataaatcgtaatattgct |
121 |
Q |
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| T |
19883692 |
aaatcatttttgctgatcaaaaagtgaaaccatacatagacaatatgtgaaaaaatttccaaccataaataataatattgct |
19883773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 255
Target Start/End: Complemental strand, 20125087 - 20124955
Alignment:
| Q |
130 |
aaataaagattgtactgttagaaaaagataaagaaaaaga----gctaa----catcaaggccatgagaaacacgacgggatagccttataataaactaa |
221 |
Q |
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| T |
20125087 |
aaataaagattgtactattagaaaaagaaaaagaaaagaaaaaggctaaggtacatcaaggc-atgagaaacaggacgggataaccttataatatgcaaa |
20124989 |
T |
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| Q |
222 |
agacaaaaagtgagaaagaatatagcttttgctt |
255 |
Q |
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| T |
20124988 |
agaaaaatggtgagaaagaatgtatcatttgctt |
20124955 |
T |
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