View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18380_low_32 (Length: 312)
Name: NF18380_low_32
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18380_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 16017975 - 16018232
Alignment:
| Q |
1 |
gcagcctcaatcaaccaagtgtagcgaattagacaagttagtgcaaacaatatctccattatgaagcattgagactgatacagacatcagacacagcact |
100 |
Q |
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| T |
16017975 |
gcagcctcaatcaaccaagtgtagcgaattagacaagttagtgcaaacaatatctccattatgaagcattgagactgatacagacatcagacacaacact |
16018074 |
T |
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| Q |
101 |
gacattgacacgtacacattgttaagaaaataaaagtgattaaatgtaaccacgtgttggtgtcggaacactgacacgagtcggacacaagacatgtctt |
200 |
Q |
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| T |
16018075 |
gacattgacacgtacacactgttaagaaaataaaagtgattaaatgtaaccacgtgttggtgtctgaacactgacacggatcggacacaagacatgtctt |
16018174 |
T |
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| Q |
201 |
taatctaaagcttcagtgctgcataaatctacaaaacagtcagggaaggacttgcaat |
258 |
Q |
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| T |
16018175 |
taatctaaagcttcagtgctgcataaatctacgaaacagtcaggaaatgacttgcaat |
16018232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 3943765 - 3943801
Alignment:
| Q |
122 |
ttaagaaaataaaagtgattaaatgtaaccacgtgtt |
158 |
Q |
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| T |
3943765 |
ttaagaaaataaaagtgattgaatgtaaccacatgtt |
3943801 |
T |
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